Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
C2G38_86240660Kd inner membrane protein. (406 aa)    
Predicted Functional Partners:
C2G38_2220066
Protein transporter SEC61 alpha subunit.
   
 0.933
C2G38_2207761
Tim44 domain-containing protein.
   
 
 0.919
C2G38_258436
Uncharacterized protein.
  
 0.901
C2G38_1925404
Ribosomal protein S16 domain-containing protein.
   
 
 0.883
C2G38_2033226
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.877
C2G38_2131958
Pumilio 2.
    
 
 0.868
C2G38_1974930
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
    
 0.864
C2G38_2046348
Mitochondrial 39-S ribosomal protein L47 (MRP-L47)-domain-containing protein.
   
 
 0.862
C2G38_135268
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.862
C2G38_2147461
Ribosomal protein S5 domain 2-type protein.
   
   0.858
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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