Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2133543Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1422 aa)    
Predicted Functional Partners:
C2G38_2248980
Pre-mRNA-splicing factor SYF1.
   
 0.994
C2G38_2254124
Uncharacterized protein.
   
 0.993
C2G38_2002399
WD40-repeat-containing domain protein.
    
 0.990
C2G38_1998107
Isy1-like splicing factor.
    
 0.989
C2G38_1975849
Cell cycle control protein cwf14.
    
 0.987
C2G38_2043992
Uncharacterized protein.
    
 0.986
C2G38_1893400
Uncharacterized protein.
    
 0.985
C2G38_1040469
RRM domain-containing protein.
    
 0.977
C2G38_2088055
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
    
 0.961
C2G38_2202603
WD40-repeat-containing domain protein.
    
 0.958
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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