C2G38_2296505 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2296505

AMP-binding domain-containing protein. (695 aa)

Predicted Functional Partners:

C2G38_1988266

0.830

C2G38_2251611

0.814

C2G38_2087926

0.814

C2G38_2109960

0.810

C2G38_2074506

0.760

C2G38_2193207

0.753

C2G38_2168379

0.753

C2G38_2239824

0.753

C2G38_2246740

0.748

C2G38_1950144

0.743

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1950144	C2G38_1988266	A0A397W4E4	A0A397U4I9	DNA damage-binding protein 1a-like protein.	Ubiquitin and ribosomal protein S27a-like protein.	0.880
C2G38_1950144	C2G38_2246740	A0A397W4E4	A0A397V309	DNA damage-binding protein 1a-like protein.	Uncharacterized protein.	0.573
C2G38_1950144	C2G38_2296505	A0A397W4E4	A0A397TY12	DNA damage-binding protein 1a-like protein.	AMP-binding domain-containing protein.	0.743
C2G38_1988266	C2G38_1950144	A0A397U4I9	A0A397W4E4	Ubiquitin and ribosomal protein S27a-like protein.	DNA damage-binding protein 1a-like protein.	0.880
C2G38_1988266	C2G38_2074506	A0A397U4I9	A0A397VK24	Ubiquitin and ribosomal protein S27a-like protein.	Kinase-like domain-containing protein.	0.794
C2G38_1988266	C2G38_2087926	A0A397U4I9	A0A397V4X7	Ubiquitin and ribosomal protein S27a-like protein.	Uncharacterized protein.	0.809
C2G38_1988266	C2G38_2109960	A0A397U4I9	A0A397UF32	Ubiquitin and ribosomal protein S27a-like protein.	Uncharacterized protein.	0.515
C2G38_1988266	C2G38_2168379	A0A397U4I9	A0A397VX20	Ubiquitin and ribosomal protein S27a-like protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.550
C2G38_1988266	C2G38_2193207	A0A397U4I9	A0A397V0X5	Ubiquitin and ribosomal protein S27a-like protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.550
C2G38_1988266	C2G38_2239824	A0A397U4I9	A0A397W1K7	Ubiquitin and ribosomal protein S27a-like protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.550
C2G38_1988266	C2G38_2246740	A0A397U4I9	A0A397V309	Ubiquitin and ribosomal protein S27a-like protein.	Uncharacterized protein.	0.990
C2G38_1988266	C2G38_2296505	A0A397U4I9	A0A397TY12	Ubiquitin and ribosomal protein S27a-like protein.	AMP-binding domain-containing protein.	0.830
C2G38_2074506	C2G38_1988266	A0A397VK24	A0A397U4I9	Kinase-like domain-containing protein.	Ubiquitin and ribosomal protein S27a-like protein.	0.794
C2G38_2074506	C2G38_2087926	A0A397VK24	A0A397V4X7	Kinase-like domain-containing protein.	Uncharacterized protein.	0.980
C2G38_2074506	C2G38_2246740	A0A397VK24	A0A397V309	Kinase-like domain-containing protein.	Uncharacterized protein.	0.777
C2G38_2074506	C2G38_2251611	A0A397VK24	A0A397UFW3	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.551
C2G38_2074506	C2G38_2296505	A0A397VK24	A0A397TY12	Kinase-like domain-containing protein.	AMP-binding domain-containing protein.	0.760
C2G38_2087926	C2G38_1988266	A0A397V4X7	A0A397U4I9	Uncharacterized protein.	Ubiquitin and ribosomal protein S27a-like protein.	0.809
C2G38_2087926	C2G38_2074506	A0A397V4X7	A0A397VK24	Uncharacterized protein.	Kinase-like domain-containing protein.	0.980
C2G38_2087926	C2G38_2246740	A0A397V4X7	A0A397V309	Uncharacterized protein.	Uncharacterized protein.	0.736