C2G38_2130522 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2130522

Uncharacterized protein. (199 aa)

Predicted Functional Partners:

C2G38_2210550

0.741

C2G38_2148766

0.627

C2G38_23972

0.555

C2G38_1985551

0.529

C2G38_1960902

0.524

C2G38_1877775

0.516

C2G38_2133472

0.491

C2G38_2074506

0.484

C2G38_1988971

0.471

C2G38_1988266

0.471

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1877775	C2G38_1988266	A0A397TW21	A0A397U4I9	26S proteasome non-ATPase regulatory subunit 14.	Ubiquitin and ribosomal protein S27a-like protein.	0.959
C2G38_1877775	C2G38_1988971	A0A397TW21	A0A397U1H5	26S proteasome non-ATPase regulatory subunit 14.	Ubiquitin-like domain-containing protein.	0.806
C2G38_1877775	C2G38_2074506	A0A397TW21	A0A397VK24	26S proteasome non-ATPase regulatory subunit 14.	Kinase-like domain-containing protein.	0.697
C2G38_1877775	C2G38_2130522	A0A397TW21	A0A397TYZ2	26S proteasome non-ATPase regulatory subunit 14.	Uncharacterized protein.	0.516
C2G38_1877775	C2G38_2133472	A0A397TW21	A0A397U863	26S proteasome non-ATPase regulatory subunit 14.	Ribosomal protein L5 domain-containing protein; Belongs to the universal ribosomal protein uL5 family.	0.762
C2G38_1877775	C2G38_2148766	A0A397TW21	A0A397U871	26S proteasome non-ATPase regulatory subunit 14.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.840
C2G38_1877775	C2G38_23972	A0A397TW21	A0A397USA0	26S proteasome non-ATPase regulatory subunit 14.	Metallo-dependent phosphatase-like protein; Belongs to the MRE11/RAD32 family.	0.457
C2G38_1960902	C2G38_1988266	A0A397VR10	A0A397U4I9	Uncharacterized protein.	Ubiquitin and ribosomal protein S27a-like protein.	0.970
C2G38_1960902	C2G38_1988971	A0A397VR10	A0A397U1H5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.970
C2G38_1960902	C2G38_2074506	A0A397VR10	A0A397VK24	Uncharacterized protein.	Kinase-like domain-containing protein.	0.867
C2G38_1960902	C2G38_2130522	A0A397VR10	A0A397TYZ2	Uncharacterized protein.	Uncharacterized protein.	0.524
C2G38_1960902	C2G38_2133472	A0A397VR10	A0A397U863	Uncharacterized protein.	Ribosomal protein L5 domain-containing protein; Belongs to the universal ribosomal protein uL5 family.	0.671
C2G38_1960902	C2G38_2148766	A0A397VR10	A0A397U871	Uncharacterized protein.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.881
C2G38_1960902	C2G38_23972	A0A397VR10	A0A397USA0	Uncharacterized protein.	Metallo-dependent phosphatase-like protein; Belongs to the MRE11/RAD32 family.	0.689
C2G38_1985551	C2G38_2130522	A0A397U8E8	A0A397TYZ2	Eukaryotic porin/Tom40.	Uncharacterized protein.	0.529
C2G38_1988266	C2G38_1877775	A0A397U4I9	A0A397TW21	Ubiquitin and ribosomal protein S27a-like protein.	26S proteasome non-ATPase regulatory subunit 14.	0.959
C2G38_1988266	C2G38_1960902	A0A397U4I9	A0A397VR10	Ubiquitin and ribosomal protein S27a-like protein.	Uncharacterized protein.	0.970
C2G38_1988266	C2G38_2074506	A0A397U4I9	A0A397VK24	Ubiquitin and ribosomal protein S27a-like protein.	Kinase-like domain-containing protein.	0.794
C2G38_1988266	C2G38_2130522	A0A397U4I9	A0A397TYZ2	Ubiquitin and ribosomal protein S27a-like protein.	Uncharacterized protein.	0.471
C2G38_1988266	C2G38_2133472	A0A397U4I9	A0A397U863	Ubiquitin and ribosomal protein S27a-like protein.	Ribosomal protein L5 domain-containing protein; Belongs to the universal ribosomal protein uL5 family.	0.998