C2G38_1990248 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1990248

Cys/Met metabolism PLP-dependent enzyme-domain-containing protein. (389 aa)

Predicted Functional Partners:

C2G38_2219958

0.973

C2G38_2238217

0.947

C2G38_2217124

0.932

C2G38_2037543

0.922

C2G38_2184246

0.916

C2G38_2067840

0.914

C2G38_1975131

0.912

C2G38_2230700

0.908

C2G38_2097428

0.899

C2G38_2029907

0.898

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1975131	C2G38_1990248	A0A397V1Y4	A0A397TYZ3	Homoserine dehydrogenase.	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	0.912
C2G38_1975131	C2G38_2029907	A0A397V1Y4	A0A397VZP7	Homoserine dehydrogenase.	Adenosylhomocysteinase.	0.824
C2G38_1975131	C2G38_2037543	A0A397V1Y4	A0A397V9R4	Homoserine dehydrogenase.	Homocysteine methyltransferase.	0.868
C2G38_1975131	C2G38_2067840	A0A397V1Y4	A0A397VTN7	Homoserine dehydrogenase.	Rhodanese-like domain-containing protein.	0.741
C2G38_1975131	C2G38_2184246	A0A397V1Y4	A0A397VA47	Homoserine dehydrogenase.	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	0.643
C2G38_1975131	C2G38_2217124	A0A397V1Y4	A0A397U9Q6	Homoserine dehydrogenase.	Cobalamin-independent synthase.	0.916
C2G38_1975131	C2G38_2219958	A0A397V1Y4	A0A397U524	Homoserine dehydrogenase.	Cystathionine beta synthase.	0.864
C2G38_1975131	C2G38_2230700	A0A397V1Y4	A0A397TXH6	Homoserine dehydrogenase.	Pyridoxal phosphate-dependent transferase.	0.918
C2G38_1975131	C2G38_2238217	A0A397V1Y4	A0A397W6W7	Homoserine dehydrogenase.	Cysteine synthase-like protein.	0.642
C2G38_1990248	C2G38_1975131	A0A397TYZ3	A0A397V1Y4	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Homoserine dehydrogenase.	0.912
C2G38_1990248	C2G38_2029907	A0A397TYZ3	A0A397VZP7	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Adenosylhomocysteinase.	0.898
C2G38_1990248	C2G38_2037543	A0A397TYZ3	A0A397V9R4	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Homocysteine methyltransferase.	0.922
C2G38_1990248	C2G38_2067840	A0A397TYZ3	A0A397VTN7	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Rhodanese-like domain-containing protein.	0.914
C2G38_1990248	C2G38_2097428	A0A397TYZ3	A0A397UXD5	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.899
C2G38_1990248	C2G38_2184246	A0A397TYZ3	A0A397VA47	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Tryptophan synthase beta subunit-like PLP-dependent enzyme.	0.916
C2G38_1990248	C2G38_2217124	A0A397TYZ3	A0A397U9Q6	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Cobalamin-independent synthase.	0.932
C2G38_1990248	C2G38_2219958	A0A397TYZ3	A0A397U524	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Cystathionine beta synthase.	0.973
C2G38_1990248	C2G38_2230700	A0A397TYZ3	A0A397TXH6	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Pyridoxal phosphate-dependent transferase.	0.908
C2G38_1990248	C2G38_2238217	A0A397TYZ3	A0A397W6W7	Cys/Met metabolism PLP-dependent enzyme-domain-containing protein.	Cysteine synthase-like protein.	0.947
C2G38_2029907	C2G38_1975131	A0A397VZP7	A0A397V1Y4	Adenosylhomocysteinase.	Homoserine dehydrogenase.	0.824