STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1990004Putative 5-3 exonuclease. (244 aa)    
Predicted Functional Partners:
C2G38_2238268
RAI1 like PD-XK nuclease-domain-containing protein.
   
 
 0.864
C2G38_2136639
RNA polymerase II-binding domain-containing protein.
    
 
 0.859
C2G38_1292045
XRN1_D2_D3 domain-containing protein.
  
 
 0.852
C2G38_1990012
Uncharacterized protein.
 
     0.836
C2G38_1987820
Putative 5-3 exonuclease.
  
 
0.821
C2G38_1291956
Putative 5-3 exonuclease.
  
 
0.816
C2G38_1291930
Uncharacterized protein.
    
 0.799
C2G38_1959773
DRIM domain-containing protein.
   
  0.727
C2G38_1971193
Uncharacterized protein.
   
 
 0.705
C2G38_1968641
Ribosomal RNA-processing protein 7-domain-containing protein.
   
  0.697
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.