Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_774532Brix domain-containing protein. (295 aa)    
Predicted Functional Partners:
C2G38_2219102
Ribosome production factor 2.
   
 
 0.996
C2G38_2132741
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.996
C2G38_2041006
Armadillo-type protein.
   
 
 0.996
C2G38_2244653
Eukaryotic rRNA processing.
   
 
 0.996
C2G38_2002247
RL10P_insert domain-containing protein.
   
 
 0.995
C2G38_1972807
Anticodon-binding protein.
   
 
 0.995
C2G38_1289857
RRM domain-containing protein.
   
 
 0.995
C2G38_2131708
Nop domain-containing protein.
   
 
 0.995
C2G38_2058551
Ribosomal protein L1.
   
 
 0.995
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.994
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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