Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C2G38_1969511 | C2G38_1973994 | A0A397V3F7 | A0A397UV67 | DNA helicase. | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | 0.650 |
C2G38_1969511 | C2G38_1977270 | A0A397V3F7 | A0A397UX22 | DNA helicase. | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | 0.943 |
C2G38_1969511 | C2G38_2016176 | A0A397V3F7 | A0A397V9S8 | DNA helicase. | DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. | 0.970 |
C2G38_1969511 | C2G38_2049988 | A0A397V3F7 | A0A397U035 | DNA helicase. | Ribonuclease H-like domain-containing protein. | 0.844 |
C2G38_1969511 | C2G38_2092817 | A0A397V3F7 | A0A397UZD8 | DNA helicase. | DNA helicase; Belongs to the MCM family. | 0.999 |
C2G38_1969511 | C2G38_2105025 | A0A397V3F7 | A0A397UN04 | DNA helicase. | DNA helicase; Belongs to the MCM family. | 0.999 |
C2G38_1969511 | C2G38_2132970 | A0A397V3F7 | A0A397UGS9 | DNA helicase. | DNA helicase; Belongs to the MCM family. | 0.999 |
C2G38_1969511 | C2G38_2139717 | A0A397V3F7 | A0A397VM17 | DNA helicase. | DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. | 0.997 |
C2G38_1969511 | FEN1 | A0A397V3F7 | A0A397U9H6 | DNA helicase. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.933 |
C2G38_1969511 | MCM7 | A0A397V3F7 | A0A397VT26 | DNA helicase. | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | 0.999 |
C2G38_1973994 | C2G38_1969511 | A0A397UV67 | A0A397V3F7 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA helicase. | 0.650 |
C2G38_1973994 | C2G38_1977270 | A0A397UV67 | A0A397UX22 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | 0.912 |
C2G38_1973994 | C2G38_2016176 | A0A397UV67 | A0A397V9S8 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. | 0.935 |
C2G38_1973994 | C2G38_2049988 | A0A397UV67 | A0A397U035 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | Ribonuclease H-like domain-containing protein. | 0.858 |
C2G38_1973994 | C2G38_2092817 | A0A397UV67 | A0A397UZD8 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA helicase; Belongs to the MCM family. | 0.439 |
C2G38_1973994 | C2G38_2105025 | A0A397UV67 | A0A397UN04 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA helicase; Belongs to the MCM family. | 0.679 |
C2G38_1973994 | C2G38_2139717 | A0A397UV67 | A0A397VM17 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. | 0.915 |
C2G38_1973994 | FEN1 | A0A397UV67 | A0A397U9H6 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.982 |
C2G38_1977270 | C2G38_1969511 | A0A397UX22 | A0A397V3F7 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA helicase. | 0.943 |
C2G38_1977270 | C2G38_1973994 | A0A397UX22 | A0A397UV67 | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | DNA polymerase alpha/epsilon subunit B-domain-containing protein. | 0.912 |
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