STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1990715S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (506 aa)    
Predicted Functional Partners:
C2G38_1984126
Brix domain-containing protein.
   
   0.887
C2G38_578211
WD40-repeat-containing domain protein.
   
 
 0.873
C2G38_2132741
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
  
 
 0.860
C2G38_2000493
Noc2p family-domain-containing protein.
   
 
 0.855
C2G38_2244653
Eukaryotic rRNA processing.
   
 
 0.850
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.842
C2G38_1971431
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.840
C2G38_1972807
Anticodon-binding protein.
   
 
 0.837
C2G38_2197508
Formyl transferase.
  
  
 0.835
C2G38_1289857
RRM domain-containing protein.
   
 
 0.834
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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