C2G38_804954 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_804954

S-adenosyl-L-methionine-dependent methyltransferase. (322 aa)

Predicted Functional Partners:

C2G38_660753

0.641

C2G38_2045278

0.636

C2G38_2195583

0.520

C2G38_1973501

0.517

C2G38_2253925

0.516

C2G38_1958712

0.512

C2G38_1892926

0.510

C2G38_2110899

0.504

C2G38_2125880

0.494

C2G38_1607966

0.492

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1607966	C2G38_1892926	A0A397UXQ7	A0A397TRS2	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.991
C2G38_1607966	C2G38_1958712	A0A397UXQ7	A0A397VV52	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	Uncharacterized protein.	0.996
C2G38_1607966	C2G38_1973501	A0A397UXQ7	A0A397V2X3	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	NADH dehydrogenase, alpha subcomplex, subunit 6; Belongs to the complex I LYR family.	0.998
C2G38_1607966	C2G38_2045278	A0A397UXQ7	A0A397UHP6	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	Uncharacterized protein.	0.997
C2G38_1607966	C2G38_2195583	A0A397UXQ7	A0A397UX19	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	ETC complex I subunit conserved region-domain-containing protein.	0.998
C2G38_1607966	C2G38_2253925	A0A397UXQ7	A0A397U4T3	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.997
C2G38_1607966	C2G38_660753	A0A397UXQ7	A0A397U3F2	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	NADH dehydrogenase I, D subunit; Belongs to the complex I 49 kDa subunit family.	0.994
C2G38_1607966	C2G38_804954	A0A397UXQ7	A0A397U2E1	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	S-adenosyl-L-methionine-dependent methyltransferase.	0.492
C2G38_1892926	C2G38_1607966	A0A397TRS2	A0A397UXQ7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	0.991
C2G38_1892926	C2G38_1958712	A0A397TRS2	A0A397VV52	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.998
C2G38_1892926	C2G38_1973501	A0A397TRS2	A0A397V2X3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH dehydrogenase, alpha subcomplex, subunit 6; Belongs to the complex I LYR family.	0.993
C2G38_1892926	C2G38_2045278	A0A397TRS2	A0A397UHP6	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.992
C2G38_1892926	C2G38_2195583	A0A397TRS2	A0A397UX19	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	ETC complex I subunit conserved region-domain-containing protein.	0.995
C2G38_1892926	C2G38_2253925	A0A397TRS2	A0A397U4T3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.997
C2G38_1892926	C2G38_660753	A0A397TRS2	A0A397U3F2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH dehydrogenase I, D subunit; Belongs to the complex I 49 kDa subunit family.	0.989
C2G38_1892926	C2G38_804954	A0A397TRS2	A0A397U2E1	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	S-adenosyl-L-methionine-dependent methyltransferase.	0.510
C2G38_1958712	C2G38_1607966	A0A397VV52	A0A397UXQ7	Uncharacterized protein.	NADH-ubiquinone oxidoreductase B12 subunit family-domain-containing protein.	0.996
C2G38_1958712	C2G38_1892926	A0A397VV52	A0A397TRS2	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.998
C2G38_1958712	C2G38_1973501	A0A397VV52	A0A397V2X3	Uncharacterized protein.	NADH dehydrogenase, alpha subcomplex, subunit 6; Belongs to the complex I LYR family.	0.999
C2G38_1958712	C2G38_2045278	A0A397VV52	A0A397UHP6	Uncharacterized protein.	Uncharacterized protein.	0.999