Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C2G38_2231178Survival motor neuron interacting protein 1-domain-containing protein. (269 aa)    
Predicted Functional Partners:
C2G38_1496348
Quinon protein alcohol dehydrogenase-like superfamily.
    
 0.988
C2G38_1956880
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 0.982
C2G38_1949059
WD40-repeat-containing domain protein.
   
 0.978
C2G38_2190679
Small nuclear ribonucleoprotein G.
    
  0.962
C2G38_2019696
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.959
C2G38_1988889
Small nuclear ribonucleoprotein Sm D2.
    
 0.950
C2G38_68757
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.949
C2G38_2228554
Putative membrane-associated protein.
    
  0.933
C2G38_2250294
RRM domain-containing protein.
   
   0.790
C2G38_1958716
U1 small nuclear ribonucleo protein of 70kDa MW N terminal-domain-containing protein.
   
   0.790
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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