STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_687198HBS1_N domain-containing protein. (111 aa)    
Predicted Functional Partners:
C2G38_2158493
Exosome complex exonuclease RRP43.
    
 0.978
C2G38_2118150
Ribosomal protein S5 domain 2-type protein.
    
 0.963
C2G38_1968095
S1 motif domain-containing protein.
    
 0.963
C2G38_1955542
Uncharacterized protein.
    
 0.961
C2G38_2096056
Ribosomal protein S5 domain 2-type protein.
   
 0.960
C2G38_2047320
Ribosomal protein S5 domain 2-type protein.
    
 0.959
C2G38_2003927
Ribosomal protein S5 domain 2-type protein.
    
 0.958
C2G38_2019741
KH_dom_type_1 domain-containing protein.
    
 0.954
C2G38_1982303
Uncharacterized protein; Belongs to the RNR ribonuclease family.
   
 0.945
C2G38_2185932
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
 0.945
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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