Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_736281XRN_M domain-containing protein. (201 aa)    
Predicted Functional Partners:
C2G38_1291956
Putative 5-3 exonuclease.
 
 
 0.873
C2G38_2238268
RAI1 like PD-XK nuclease-domain-containing protein.
   
 
 0.859
C2G38_1987820
Putative 5-3 exonuclease.
  
 
 0.849
C2G38_2136639
RNA polymerase II-binding domain-containing protein.
    
 
 0.848
C2G38_1292045
XRN1_D2_D3 domain-containing protein.
  
 
 0.833
C2G38_1968641
Ribosomal RNA-processing protein 7-domain-containing protein.
   
 0.814
C2G38_2251141
DNA-directed RNA polymerase.
    
 
 0.803
C2G38_2230616
CLP1_P domain-containing protein.
   
 
 0.798
C2G38_1291930
Uncharacterized protein.
    
 0.763
C2G38_736465
Putative 5-3 exonuclease.
 
     0.761
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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