C2G38_2047807 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2047807

CobW/HypB/UreG, nucleotide-binding domain-containing protein. (396 aa)

Predicted Functional Partners:

C2G38_2033146

0.901

C2G38_1985957

0.702

C2G38_1960697

0.682

C2G38_1986314

0.674

C2G38_1979392

0.588

C2G38_2290827

0.556

C2G38_2122486

0.556

C2G38_2221304

0.556

C2G38_2194741

0.517

C2G38_1956321

0.497

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1956321	C2G38_2047807	A0A397VSI4	A0A397U4M6	FAM72 protein.	CobW/HypB/UreG, nucleotide-binding domain-containing protein.	0.497
C2G38_1960697	C2G38_1979392	A0A397VJ73	A0A397UN79	Ribosomal protein S14.	Uncharacterized protein.	0.956
C2G38_1960697	C2G38_1985957	A0A397VJ73	A0A397UFZ0	Ribosomal protein S14.	Ribosomal L28 family-domain-containing protein.	0.964
C2G38_1960697	C2G38_2033146	A0A397VJ73	A0A397VPS1	Ribosomal protein S14.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.857
C2G38_1960697	C2G38_2047807	A0A397VJ73	A0A397U4M6	Ribosomal protein S14.	CobW/HypB/UreG, nucleotide-binding domain-containing protein.	0.682
C2G38_1960697	C2G38_2122486	A0A397VJ73	A0A397U3U6	Ribosomal protein S14.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.835
C2G38_1960697	C2G38_2221304	A0A397VJ73	A0A397U7T9	Ribosomal protein S14.	Peptidase M24, structural domain-containing protein.	0.852
C2G38_1960697	C2G38_2290827	A0A397VJ73	A0A397U081	Ribosomal protein S14.	Peptidase M24, structural domain-containing protein.	0.852
C2G38_1979392	C2G38_1960697	A0A397UN79	A0A397VJ73	Uncharacterized protein.	Ribosomal protein S14.	0.956
C2G38_1979392	C2G38_1985957	A0A397UN79	A0A397UFZ0	Uncharacterized protein.	Ribosomal L28 family-domain-containing protein.	0.992
C2G38_1979392	C2G38_1986314	A0A397UN79	A0A397U6T1	Uncharacterized protein.	Uncharacterized protein.	0.980
C2G38_1979392	C2G38_2047807	A0A397UN79	A0A397U4M6	Uncharacterized protein.	CobW/HypB/UreG, nucleotide-binding domain-containing protein.	0.588
C2G38_1985957	C2G38_1960697	A0A397UFZ0	A0A397VJ73	Ribosomal L28 family-domain-containing protein.	Ribosomal protein S14.	0.964
C2G38_1985957	C2G38_1979392	A0A397UFZ0	A0A397UN79	Ribosomal L28 family-domain-containing protein.	Uncharacterized protein.	0.992
C2G38_1985957	C2G38_1986314	A0A397UFZ0	A0A397U6T1	Ribosomal L28 family-domain-containing protein.	Uncharacterized protein.	0.978
C2G38_1985957	C2G38_2047807	A0A397UFZ0	A0A397U4M6	Ribosomal L28 family-domain-containing protein.	CobW/HypB/UreG, nucleotide-binding domain-containing protein.	0.702
C2G38_1986314	C2G38_1979392	A0A397U6T1	A0A397UN79	Uncharacterized protein.	Uncharacterized protein.	0.980
C2G38_1986314	C2G38_1985957	A0A397U6T1	A0A397UFZ0	Uncharacterized protein.	Ribosomal L28 family-domain-containing protein.	0.978
C2G38_1986314	C2G38_2033146	A0A397U6T1	A0A397VPS1	Uncharacterized protein.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.835
C2G38_1986314	C2G38_2047807	A0A397U6T1	A0A397U4M6	Uncharacterized protein.	CobW/HypB/UreG, nucleotide-binding domain-containing protein.	0.674