Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1987950YTH domain-containing protein. (252 aa)    
Predicted Functional Partners:
C2G38_2027378
YTH domain-containing protein.
   
 
 0.858
C2G38_1968258
Ribonuclease H-like domain-containing protein.
    
 
 0.816
C2G38_2000617
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.757
C2G38_2028403
MT-A70-domain-containing protein; Belongs to the MT-A70-like family.
  
 
 
 0.737
C2G38_1259061
Uncharacterized protein.
  
  
 0.696
C2G38_2044148
Uncharacterized protein.
    
 
 0.690
C2G38_1884558
zf-C3H1 domain-containing protein.
    
 
 0.690
C2G38_1780742
Uncharacterized protein.
    
 
 0.690
C2G38_2041895
Endonuclease/exonuclease/phosphatase.
    
 
 0.653
C2G38_2013485
RNA recognition motif 2-domain-containing protein.
    
 
 0.621
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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