C2G38_2007937 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2007937

NmrA domain-containing protein. (289 aa)

Predicted Functional Partners:

C2G38_1732417

0.868

C2G38_1990005

0.855

C2G38_2133499

0.847

C2G38_1999896

0.839

C2G38_2130946

0.832

C2G38_1969255

0.830

C2G38_660753

0.828

C2G38_2197418

0.828

C2G38_2185313

0.828

C2G38_2156711

0.828

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1732417	C2G38_1969255	A0A397UUK4	A0A397V3X1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	0.998
C2G38_1732417	C2G38_1990005	A0A397UUK4	A0A397U2X1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome C1 family-domain-containing protein.	0.999
C2G38_1732417	C2G38_1999896	A0A397UUK4	A0A397VLI7	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 23 kDa subunit.	0.998
C2G38_1732417	C2G38_2007937	A0A397UUK4	A0A397U6C7	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NmrA domain-containing protein.	0.868
C2G38_1732417	C2G38_2130946	A0A397UUK4	A0A397WCS3	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-quinone oxidoreductase; Belongs to the complex I 75 kDa subunit family.	0.997
C2G38_1732417	C2G38_2133499	A0A397UUK4	A0A397TZ23	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.471
C2G38_1732417	C2G38_2156711	A0A397UUK4	A0A397W4A9	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.995
C2G38_1732417	C2G38_2185313	A0A397UUK4	A0A397VA63	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.995
C2G38_1732417	C2G38_2197418	A0A397UUK4	A0A397UW69	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Complex1_30kDa domain-containing protein.	0.995
C2G38_1732417	C2G38_660753	A0A397UUK4	A0A397U3F2	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH dehydrogenase I, D subunit; Belongs to the complex I 49 kDa subunit family.	0.998
C2G38_1969255	C2G38_1732417	A0A397V3X1	A0A397UUK4	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.998
C2G38_1969255	C2G38_1990005	A0A397V3X1	A0A397U2X1	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	Cytochrome C1 family-domain-containing protein.	0.998
C2G38_1969255	C2G38_1999896	A0A397V3X1	A0A397VLI7	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	NADH-ubiquinone oxidoreductase 23 kDa subunit.	0.999
C2G38_1969255	C2G38_2007937	A0A397V3X1	A0A397U6C7	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	NmrA domain-containing protein.	0.830
C2G38_1969255	C2G38_2130946	A0A397V3X1	A0A397WCS3	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	NADH-quinone oxidoreductase; Belongs to the complex I 75 kDa subunit family.	0.999
C2G38_1969255	C2G38_2156711	A0A397V3X1	A0A397W4A9	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
C2G38_1969255	C2G38_2185313	A0A397V3X1	A0A397VA63	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.997
C2G38_1969255	C2G38_2197418	A0A397V3X1	A0A397UW69	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	Complex1_30kDa domain-containing protein.	0.997
C2G38_1969255	C2G38_660753	A0A397V3X1	A0A397U3F2	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	NADH dehydrogenase I, D subunit; Belongs to the complex I 49 kDa subunit family.	0.999
C2G38_1990005	C2G38_1732417	A0A397U2X1	A0A397UUK4	Cytochrome C1 family-domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999