Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C2G38_2227199Uncharacterized protein. (353 aa)    
Predicted Functional Partners:
C2G38_1992815
Uncharacterized protein.
   
    0.823
C2G38_68757
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
   0.798
C2G38_2131708
Nop domain-containing protein.
   
 
 0.769
C2G38_1289857
RRM domain-containing protein.
   
 
 0.761
C2G38_1717167
Protein BCP1; Involved in nuclear export, actin cytoskeleton organization and vesicular transport; Belongs to the BCP1 family.
   
   0.759
C2G38_2122486
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
   
    0.738
C2G38_2244653
Eukaryotic rRNA processing.
   
    0.727
C2G38_1988889
Small nuclear ribonucleoprotein Sm D2.
   
  
 0.724
C2G38_1980146
Eukaryotic translation initiation factor 2 alpha subunit-domain-containing protein.
   
    0.717
C2G38_2134623
T-complex protein 1 subunit beta.
   
   0.709
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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