C2G38_2148317 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2148317

Reticulon-like protein. (334 aa)

Predicted Functional Partners:

C2G38_2253523

0.958

C2G38_2207864

0.924

C2G38_1894535

0.904

C2G38_2015174

0.898

C2G38_1975328

0.826

C2G38_2041282

0.820

C2G38_2022938

0.815

C2G38_2146469

0.815

C2G38_2310567

0.815

C2G38_2043996

0.810

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1894535	C2G38_2022938	A0A397VDQ9	A0A397U918	Zinc_ribbon_10 domain-containing protein.	PapD-like protein.	0.403
C2G38_1894535	C2G38_2043996	A0A397VDQ9	A0A397UHP9	Zinc_ribbon_10 domain-containing protein.	Sec63 Brl domain-containing protein.	0.771
C2G38_1894535	C2G38_2146469	A0A397VDQ9	A0A397UR35	Zinc_ribbon_10 domain-containing protein.	PapD-like protein.	0.403
C2G38_1894535	C2G38_2148317	A0A397VDQ9	A0A397U6N6	Zinc_ribbon_10 domain-containing protein.	Reticulon-like protein.	0.904
C2G38_1894535	C2G38_2253523	A0A397VDQ9	A0A397U6T6	Zinc_ribbon_10 domain-containing protein.	Protein YOP1.	0.911
C2G38_1975328	C2G38_2043996	A0A397USU4	A0A397UHP9	Autophagy-related protein.	Sec63 Brl domain-containing protein.	0.693
C2G38_1975328	C2G38_2148317	A0A397USU4	A0A397U6N6	Autophagy-related protein.	Reticulon-like protein.	0.826
C2G38_2015174	C2G38_2148317	A0A397VHM6	A0A397U6N6	Uncharacterized protein.	Reticulon-like protein.	0.898
C2G38_2015174	C2G38_2253523	A0A397VHM6	A0A397U6T6	Uncharacterized protein.	Protein YOP1.	0.647
C2G38_2022938	C2G38_1894535	A0A397U918	A0A397VDQ9	PapD-like protein.	Zinc_ribbon_10 domain-containing protein.	0.403
C2G38_2022938	C2G38_2043996	A0A397U918	A0A397UHP9	PapD-like protein.	Sec63 Brl domain-containing protein.	0.880
C2G38_2022938	C2G38_2148317	A0A397U918	A0A397U6N6	PapD-like protein.	Reticulon-like protein.	0.815
C2G38_2022938	C2G38_2253523	A0A397U918	A0A397U6T6	PapD-like protein.	Protein YOP1.	0.431
C2G38_2041282	C2G38_2043996	A0A397UV77	A0A397UHP9	Uncharacterized protein.	Sec63 Brl domain-containing protein.	0.608
C2G38_2041282	C2G38_2148317	A0A397UV77	A0A397U6N6	Uncharacterized protein.	Reticulon-like protein.	0.820
C2G38_2041282	C2G38_2207864	A0A397UV77	A0A397UHU8	Uncharacterized protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.469
C2G38_2043996	C2G38_1894535	A0A397UHP9	A0A397VDQ9	Sec63 Brl domain-containing protein.	Zinc_ribbon_10 domain-containing protein.	0.771
C2G38_2043996	C2G38_1975328	A0A397UHP9	A0A397USU4	Sec63 Brl domain-containing protein.	Autophagy-related protein.	0.693
C2G38_2043996	C2G38_2022938	A0A397UHP9	A0A397U918	Sec63 Brl domain-containing protein.	PapD-like protein.	0.880
C2G38_2043996	C2G38_2041282	A0A397UHP9	A0A397UV77	Sec63 Brl domain-containing protein.	Uncharacterized protein.	0.608