STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2225387Pre-mRNA-splicing factor SPF27. (199 aa)    
Predicted Functional Partners:
C2G38_2002399
WD40-repeat-containing domain protein.
   
 0.928
C2G38_2199398
Putative Pre-mRNA splicing protein prp5.
   
 0.925
C2G38_2104441
Pre-mRNA splicing factor component-domain-containing protein.
   
 0.919
C2G38_2217537
Pre-mRNA-splicing factor Cwf15/Cwc15.
   
 0.909
C2G38_1976449
Catenin-beta-like protein.
   
 0.834
C2G38_2202603
WD40-repeat-containing domain protein.
   
 
 0.814
C2G38_2228554
Putative membrane-associated protein.
   
   0.803
C2G38_1983540
Uncharacterized protein.
   
 
 0.796
C2G38_1948122
Uncharacterized protein.
    
  0.793
C2G38_1985976
PRP8 pre-mRNA processing factor 8.
    
 
 0.791
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.