C2G38_1985515 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1985515

Mitochondrial ribosomal protein L31-domain-containing protein. (107 aa)

Predicted Functional Partners:

C2G38_713082

0.630

C2G38_2050446

0.623

C2G38_2111572

0.623

C2G38_1904078

0.623

C2G38_2194496

0.623

C2G38_2144983

0.622

C2G38_1975197

0.622

C2G38_2204396

0.622

C2G38_1989511

0.621

C2G38_2008379

0.621

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1904078	C2G38_1975197	A0A397UKY6	A0A397USW2	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.996
C2G38_1904078	C2G38_1985515	A0A397UKY6	A0A397U8E9	Uncharacterized protein.	Mitochondrial ribosomal protein L31-domain-containing protein.	0.623
C2G38_1904078	C2G38_1989511	A0A397UKY6	A0A397U0B4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.995
C2G38_1904078	C2G38_2008379	A0A397UKY6	A0A397U5L9	Uncharacterized protein.	50S ribosomal protein L4.	0.999
C2G38_1904078	C2G38_2050446	A0A397UKY6	A0A397TUZ7	Uncharacterized protein.	Ribosomal protein L5 domain-containing protein.	0.995
C2G38_1904078	C2G38_2111572	A0A397UKY6	A0A397UDL3	Uncharacterized protein.	Uncharacterized protein.	0.940
C2G38_1904078	C2G38_2144983	A0A397UKY6	A0A397UQW4	Uncharacterized protein.	Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.	0.990
C2G38_1904078	C2G38_2194496	A0A397UKY6	A0A397UWL4	Uncharacterized protein.	Ribosomal protein S2, flavodoxin-like domain-containing protein; Belongs to the universal ribosomal protein uS2 family.	0.999
C2G38_1904078	C2G38_2204396	A0A397UKY6	A0A397UU67	Uncharacterized protein.	Ribosomal protein L18e/L15P.	0.998
C2G38_1975197	C2G38_1904078	A0A397USW2	A0A397UKY6	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.996
C2G38_1975197	C2G38_1985515	A0A397USW2	A0A397U8E9	S4 RNA-binding domain-containing protein.	Mitochondrial ribosomal protein L31-domain-containing protein.	0.622
C2G38_1975197	C2G38_1989511	A0A397USW2	A0A397U0B4	S4 RNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.994
C2G38_1975197	C2G38_2008379	A0A397USW2	A0A397U5L9	S4 RNA-binding domain-containing protein.	50S ribosomal protein L4.	0.992
C2G38_1975197	C2G38_2050446	A0A397USW2	A0A397TUZ7	S4 RNA-binding domain-containing protein.	Ribosomal protein L5 domain-containing protein.	0.989
C2G38_1975197	C2G38_2111572	A0A397USW2	A0A397UDL3	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.934
C2G38_1975197	C2G38_2144983	A0A397USW2	A0A397UQW4	S4 RNA-binding domain-containing protein.	Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.	0.970
C2G38_1975197	C2G38_2194496	A0A397USW2	A0A397UWL4	S4 RNA-binding domain-containing protein.	Ribosomal protein S2, flavodoxin-like domain-containing protein; Belongs to the universal ribosomal protein uS2 family.	0.994
C2G38_1975197	C2G38_2204396	A0A397USW2	A0A397UU67	S4 RNA-binding domain-containing protein.	Ribosomal protein L18e/L15P.	0.988
C2G38_1985515	C2G38_1904078	A0A397U8E9	A0A397UKY6	Mitochondrial ribosomal protein L31-domain-containing protein.	Uncharacterized protein.	0.623
C2G38_1985515	C2G38_1975197	A0A397U8E9	A0A397USW2	Mitochondrial ribosomal protein L31-domain-containing protein.	S4 RNA-binding domain-containing protein.	0.622