C2G38_2216612 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2216612

Uncharacterized protein. (303 aa)

Predicted Functional Partners:

C2G38_2074506

0.836

C2G38_198479

0.821

C2G38_2038825

0.806

C2G38_2133732

0.786

C2G38_2174300

0.786

C2G38_1951273

0.745

C2G38_2109223

0.744

C2G38_1971167

0.738

C2G38_1971345

0.736

C2G38_514818

0.721

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1951273	C2G38_1971345	A0A397WAS6	A0A397V2A4	Uncharacterized protein.	HSP20-like chaperone.	0.686
C2G38_1951273	C2G38_2038825	A0A397WAS6	A0A397V3D5	Uncharacterized protein.	HSP20-like chaperone.	0.855
C2G38_1951273	C2G38_2074506	A0A397WAS6	A0A397VK24	Uncharacterized protein.	Kinase-like domain-containing protein.	0.625
C2G38_1951273	C2G38_2109223	A0A397WAS6	A0A397UPW8	Uncharacterized protein.	SGS domain-containing protein.	0.644
C2G38_1951273	C2G38_2133732	A0A397WAS6	A0A397TRC6	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.740
C2G38_1951273	C2G38_2174300	A0A397WAS6	A0A397VKE8	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase D.	0.740
C2G38_1951273	C2G38_2216612	A0A397WAS6	A0A397U8P4	Uncharacterized protein.	Uncharacterized protein.	0.745
C2G38_1951273	C2G38_514818	A0A397WAS6	A0A397VWA8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.717
C2G38_1971167	C2G38_2074506	A0A397V0D3	A0A397VK24	Rap-GAP domain-containing protein.	Kinase-like domain-containing protein.	0.460
C2G38_1971167	C2G38_2216612	A0A397V0D3	A0A397U8P4	Rap-GAP domain-containing protein.	Uncharacterized protein.	0.738
C2G38_1971345	C2G38_1951273	A0A397V2A4	A0A397WAS6	HSP20-like chaperone.	Uncharacterized protein.	0.686
C2G38_1971345	C2G38_2038825	A0A397V2A4	A0A397V3D5	HSP20-like chaperone.	HSP20-like chaperone.	0.502
C2G38_1971345	C2G38_2109223	A0A397V2A4	A0A397UPW8	HSP20-like chaperone.	SGS domain-containing protein.	0.992
C2G38_1971345	C2G38_2216612	A0A397V2A4	A0A397U8P4	HSP20-like chaperone.	Uncharacterized protein.	0.736
C2G38_198479	C2G38_2038825	A0A397UM54	A0A397V3D5	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	HSP20-like chaperone.	0.634
C2G38_198479	C2G38_2074506	A0A397UM54	A0A397VK24	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Kinase-like domain-containing protein.	0.740
C2G38_198479	C2G38_2133732	A0A397UM54	A0A397TRC6	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.496
C2G38_198479	C2G38_2174300	A0A397UM54	A0A397VKE8	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Peptidyl-prolyl cis-trans isomerase D.	0.496
C2G38_198479	C2G38_2216612	A0A397UM54	A0A397U8P4	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Uncharacterized protein.	0.821
C2G38_2038825	C2G38_1951273	A0A397V3D5	A0A397WAS6	HSP20-like chaperone.	Uncharacterized protein.	0.855