Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1985976PRP8 pre-mRNA processing factor 8. (2355 aa)    
Predicted Functional Partners:
C2G38_2156242
Sec63 Brl domain-containing protein.
   
 0.999
C2G38_1987308
PRP1 splicing factor, N-terminal-domain-containing protein.
   
 0.996
C2G38_2049906
WD40 repeat-like protein.
   
 0.995
C2G38_2203389
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 0.995
C2G38_1988888
CPSF A subunit region-domain-containing protein.
   
 
 0.993
C2G38_2169978
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.993
C2G38_2190679
Small nuclear ribonucleoprotein G.
   
 0.990
C2G38_2228554
Putative membrane-associated protein.
   
 0.982
C2G38_2019696
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.982
C2G38_2029301
Small nuclear ribonucleoprotein-associated protein.
   
 0.982
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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