C2G38_2149236 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2149236

RNAPII transcription regulator C-terminal-domain-containing protein. (1039 aa)

Predicted Functional Partners:

CIA1

0.993

C2G38_2251383

0.991

C2G38_1979532

0.977

C2G38_2146190

0.966

C2G38_2112181

0.957

C2G38_1406066

0.952

C2G38_1083556

0.938

C2G38_1454066

0.918

C2G38_2255775

0.915

C2G38_2240782

0.915

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1083556	C2G38_2149236	A0A397VR28	A0A397UA57	Amidophosphoribosyltransferase.	RNAPII transcription regulator C-terminal-domain-containing protein.	0.938
C2G38_1083556	C2G38_2251383	A0A397VR28	A0A397UH34	Amidophosphoribosyltransferase.	FeS_assembly_P domain-containing protein.	0.706
C2G38_1083556	CIA1	A0A397VR28	A0A397VZI0	Amidophosphoribosyltransferase.	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	0.400
C2G38_1406066	C2G38_1979532	A0A397VCI8	A0A397UMA3	DNA replication factor Dna2-domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.795
C2G38_1406066	C2G38_2112181	A0A397VCI8	A0A397UKV3	DNA replication factor Dna2-domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.846
C2G38_1406066	C2G38_2146190	A0A397VCI8	A0A397UIS5	DNA replication factor Dna2-domain-containing protein.	Cytosolic Fe-S cluster assembly factor narfl; Belongs to the NARF family.	0.483
C2G38_1406066	C2G38_2149236	A0A397VCI8	A0A397UA57	DNA replication factor Dna2-domain-containing protein.	RNAPII transcription regulator C-terminal-domain-containing protein.	0.952
C2G38_1406066	C2G38_2240782	A0A397VCI8	A0A397VX75	DNA replication factor Dna2-domain-containing protein.	DNA_pol_B domain-containing protein.	0.912
C2G38_1406066	C2G38_2251383	A0A397VCI8	A0A397UH34	DNA replication factor Dna2-domain-containing protein.	FeS_assembly_P domain-containing protein.	0.898
C2G38_1406066	C2G38_2255775	A0A397VCI8	A0A397TVR1	DNA replication factor Dna2-domain-containing protein.	DNA polymerase.	0.912
C2G38_1406066	CIA1	A0A397VCI8	A0A397VZI0	DNA replication factor Dna2-domain-containing protein.	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	0.827
C2G38_1454066	C2G38_1979532	A0A397V3Q4	A0A397UMA3	P-loop containing nucleoside triphosphate hydrolase protein.	Helicase ATP-binding domain-containing protein.	0.449
C2G38_1454066	C2G38_2146190	A0A397V3Q4	A0A397UIS5	P-loop containing nucleoside triphosphate hydrolase protein.	Cytosolic Fe-S cluster assembly factor narfl; Belongs to the NARF family.	0.669
C2G38_1454066	C2G38_2149236	A0A397V3Q4	A0A397UA57	P-loop containing nucleoside triphosphate hydrolase protein.	RNAPII transcription regulator C-terminal-domain-containing protein.	0.918
C2G38_1454066	C2G38_2251383	A0A397V3Q4	A0A397UH34	P-loop containing nucleoside triphosphate hydrolase protein.	FeS_assembly_P domain-containing protein.	0.587
C2G38_1454066	CIA1	A0A397V3Q4	A0A397VZI0	P-loop containing nucleoside triphosphate hydrolase protein.	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	0.801
C2G38_1979532	C2G38_1406066	A0A397UMA3	A0A397VCI8	Helicase ATP-binding domain-containing protein.	DNA replication factor Dna2-domain-containing protein.	0.795
C2G38_1979532	C2G38_1454066	A0A397UMA3	A0A397V3Q4	Helicase ATP-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.449
C2G38_1979532	C2G38_2112181	A0A397UMA3	A0A397UKV3	Helicase ATP-binding domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.802
C2G38_1979532	C2G38_2146190	A0A397UMA3	A0A397UIS5	Helicase ATP-binding domain-containing protein.	Cytosolic Fe-S cluster assembly factor narfl; Belongs to the NARF family.	0.736