C2G38_2148467 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2148467

Uncharacterized protein. (159 aa)

Predicted Functional Partners:

C2G38_2046720

0.825

C2G38_2110396

0.825

C2G38_2096428

0.762

C2G38_2242228

0.762

C2G38_2156694

0.751

C2G38_1976530

0.747

C2G38_1967240

0.747

C2G38_2139717

0.693

C2G38_2007798

0.622

C2G38_2135555

0.622

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1967240	C2G38_2046720	A0A397VAC4	A0A397UCQ1	Uncharacterized protein.	Uncharacterized protein.	0.986
C2G38_1967240	C2G38_2096428	A0A397VAC4	A0A397UWS8	Uncharacterized protein.	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein.	0.965
C2G38_1967240	C2G38_2110396	A0A397VAC4	A0A397UIX8	Uncharacterized protein.	Rof/RNase P-like protein.	0.988
C2G38_1967240	C2G38_2148467	A0A397VAC4	A0A397UA61	Uncharacterized protein.	Uncharacterized protein.	0.747
C2G38_1967240	C2G38_2156694	A0A397VAC4	A0A397W929	Uncharacterized protein.	Uncharacterized protein.	0.959
C2G38_1967240	C2G38_2242228	A0A397VAC4	A0A397VQ44	Uncharacterized protein.	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein.	0.965
C2G38_1976530	C2G38_2046720	A0A397USF1	A0A397UCQ1	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	Uncharacterized protein.	0.986
C2G38_1976530	C2G38_2096428	A0A397USF1	A0A397UWS8	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein.	0.965
C2G38_1976530	C2G38_2110396	A0A397USF1	A0A397UIX8	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	Rof/RNase P-like protein.	0.988
C2G38_1976530	C2G38_2148467	A0A397USF1	A0A397UA61	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	Uncharacterized protein.	0.747
C2G38_1976530	C2G38_2156694	A0A397USF1	A0A397W929	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	Uncharacterized protein.	0.959
C2G38_1976530	C2G38_2242228	A0A397USF1	A0A397VQ44	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein.	0.965
C2G38_2007798	C2G38_2135555	A0A397U5H7	A0A397U8T2	P-loop containing nucleoside triphosphate hydrolase protein.	Citrate synthase; Belongs to the citrate synthase family.	0.693
C2G38_2007798	C2G38_2139717	A0A397U5H7	A0A397VM17	P-loop containing nucleoside triphosphate hydrolase protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.806
C2G38_2007798	C2G38_2148467	A0A397U5H7	A0A397UA61	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.622
C2G38_2046720	C2G38_1967240	A0A397UCQ1	A0A397VAC4	Uncharacterized protein.	Uncharacterized protein.	0.986
C2G38_2046720	C2G38_1976530	A0A397UCQ1	A0A397USF1	Uncharacterized protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	0.986
C2G38_2046720	C2G38_2096428	A0A397UCQ1	A0A397UWS8	Uncharacterized protein.	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein.	0.986
C2G38_2046720	C2G38_2110396	A0A397UCQ1	A0A397UIX8	Uncharacterized protein.	Rof/RNase P-like protein.	0.998
C2G38_2046720	C2G38_2148467	A0A397UCQ1	A0A397UA61	Uncharacterized protein.	Uncharacterized protein.	0.825