C2G38_2117031 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2117031

Uncharacterized protein; Belongs to the complex I LYR family. (118 aa)

Predicted Functional Partners:

C2G38_1732417

0.924

C2G38_2131958

0.870

C2G38_1892926

0.748

C2G38_1972633

0.658

C2G38_2132577

0.610

C2G38_2159084

0.607

C2G38_1968641

0.574

C2G38_2136018

0.512

C2G38_1602436

0.498

C2G38_2067878

0.498

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1602436	C2G38_1892926	A0A397V0N1	A0A397TRS2	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.853
C2G38_1602436	C2G38_1972633	A0A397V0N1	A0A397UYZ7	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.744
C2G38_1602436	C2G38_2117031	A0A397V0N1	A0A397UAC8	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.498
C2G38_1602436	C2G38_2131958	A0A397V0N1	A0A397V795	Uncharacterized protein.	Pumilio 2.	0.812
C2G38_1602436	C2G38_2136018	A0A397V0N1	A0A397TYA5	Uncharacterized protein.	Uncharacterized protein.	0.643
C2G38_1602436	C2G38_2159084	A0A397V0N1	A0A397VZS6	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.834
C2G38_1732417	C2G38_1892926	A0A397UUK4	A0A397TRS2	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.986
C2G38_1732417	C2G38_1972633	A0A397UUK4	A0A397UYZ7	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.829
C2G38_1732417	C2G38_2117031	A0A397UUK4	A0A397UAC8	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.924
C2G38_1732417	C2G38_2132577	A0A397UUK4	A0A397URP7	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	ATP synthase subunit gamma.	0.980
C2G38_1732417	C2G38_2136018	A0A397UUK4	A0A397TYA5	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein.	0.835
C2G38_1892926	C2G38_1602436	A0A397TRS2	A0A397V0N1	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.853
C2G38_1892926	C2G38_1732417	A0A397TRS2	A0A397UUK4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.986
C2G38_1892926	C2G38_1972633	A0A397TRS2	A0A397UYZ7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.974
C2G38_1892926	C2G38_2067878	A0A397TRS2	A0A397VRS9	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.853
C2G38_1892926	C2G38_2117031	A0A397TRS2	A0A397UAC8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.748
C2G38_1892926	C2G38_2131958	A0A397TRS2	A0A397V795	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Pumilio 2.	0.819
C2G38_1892926	C2G38_2132577	A0A397TRS2	A0A397URP7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	ATP synthase subunit gamma.	0.914
C2G38_1892926	C2G38_2159084	A0A397TRS2	A0A397VZS6	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.781
C2G38_1968641	C2G38_2117031	A0A397V991	A0A397UAC8	Ribosomal RNA-processing protein 7-domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.574