C2G38_1985358 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1985358

Oxidoreductase. (190 aa)

Predicted Functional Partners:

C2G38_1958422

0.877

C2G38_2178984

0.869

C2G38_2225049

0.826

C2G38_259110

0.826

C2G38_259066

0.826

C2G38_187168

0.826

C2G38_119149

0.826

C2G38_2106041

0.826

C2G38_38645

0.826

C2G38_2250021

0.826

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_119149	C2G38_1985358	A0A397UM20	A0A397UAJ8	Amino acid permease-domain-containing protein.	Oxidoreductase.	0.826
C2G38_187168	C2G38_1985358	A0A397ULV9	A0A397UAJ8	Amino acid/polyamine transporter I.	Oxidoreductase.	0.826
C2G38_1958422	C2G38_1985358	A0A397VNH4	A0A397UAJ8	CBM Family 48/Glycoside Hydrolase Family 13 protein.	Oxidoreductase.	0.877
C2G38_1958422	C2G38_2178984	A0A397VNH4	A0A397VDQ2	CBM Family 48/Glycoside Hydrolase Family 13 protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.990
C2G38_1985358	C2G38_119149	A0A397UAJ8	A0A397UM20	Oxidoreductase.	Amino acid permease-domain-containing protein.	0.826
C2G38_1985358	C2G38_187168	A0A397UAJ8	A0A397ULV9	Oxidoreductase.	Amino acid/polyamine transporter I.	0.826
C2G38_1985358	C2G38_1958422	A0A397UAJ8	A0A397VNH4	Oxidoreductase.	CBM Family 48/Glycoside Hydrolase Family 13 protein.	0.877
C2G38_1985358	C2G38_2106041	A0A397UAJ8	A0A397UP18	Oxidoreductase.	Uncharacterized protein.	0.826
C2G38_1985358	C2G38_2178984	A0A397UAJ8	A0A397VDQ2	Oxidoreductase.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.869
C2G38_1985358	C2G38_2225049	A0A397UAJ8	A0A397U2Q6	Oxidoreductase.	Uncharacterized protein.	0.826
C2G38_1985358	C2G38_2250021	A0A397UAJ8	A0A397US94	Oxidoreductase.	Amino acid permease-domain-containing protein.	0.826
C2G38_1985358	C2G38_259066	A0A397UAJ8	A0A397UK43	Oxidoreductase.	Uncharacterized protein.	0.826
C2G38_1985358	C2G38_259110	A0A397UAJ8	A0A397UH26	Oxidoreductase.	Amino acid/polyamine transporter I.	0.826
C2G38_1985358	C2G38_38645	A0A397UAJ8	A0A397UPX3	Oxidoreductase.	Amino acid/polyamine transporter I.	0.826
C2G38_2106041	C2G38_1985358	A0A397UP18	A0A397UAJ8	Uncharacterized protein.	Oxidoreductase.	0.826
C2G38_2178984	C2G38_1958422	A0A397VDQ2	A0A397VNH4	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	CBM Family 48/Glycoside Hydrolase Family 13 protein.	0.990
C2G38_2178984	C2G38_1985358	A0A397VDQ2	A0A397UAJ8	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Oxidoreductase.	0.869
C2G38_2225049	C2G38_1985358	A0A397U2Q6	A0A397UAJ8	Uncharacterized protein.	Oxidoreductase.	0.826
C2G38_2250021	C2G38_1985358	A0A397US94	A0A397UAJ8	Amino acid permease-domain-containing protein.	Oxidoreductase.	0.826
C2G38_259066	C2G38_1985358	A0A397UK43	A0A397UAJ8	Uncharacterized protein.	Oxidoreductase.	0.826