Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C2G38_198378630S ribosomal protein S4. (180 aa)    
Predicted Functional Partners:
C2G38_2022090
WD40-repeat-containing domain protein.
   
 0.992
C2G38_2255389
Brix-domain-containing protein.
   
 0.991
C2G38_2187299
Uncharacterized protein.
   
 0.991
C2G38_1963210
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.991
C2G38_1968641
Ribosomal RNA-processing protein 7-domain-containing protein.
   
 0.990
C2G38_1960466
Nucleolar protein 14.
   
 0.987
C2G38_2133126
WD40-repeat-containing domain protein.
   
 0.985
C2G38_2017649
Utp21 specific WD40 associated putative domain-containing protein.
   
 0.985
C2G38_2114632
WD40-repeat-containing domain protein.
   
  0.982
C2G38_1951175
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.982
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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