C2G38_2213479 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2213479

Putative acyl-CoA dehydrogenase. (522 aa)

Predicted Functional Partners:

C2G38_2229700

0.956

C2G38_1902024

0.956

C2G38_1129330

0.910

C2G38_2132088

0.904

C2G38_2038042

0.898

C2G38_2182985

0.893

C2G38_2133204

0.867

C2G38_2210184

0.856

C2G38_2092795

0.856

C2G38_1962755

0.856

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1129330	C2G38_1902024	A0A397VJD8	A0A397U1G4	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	SCP2 sterol-binding domain-containing protein.	0.929
C2G38_1129330	C2G38_1962755	A0A397VJD8	A0A397VFK1	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	ClpP/crotonase-like domain-containing protein.	0.950
C2G38_1129330	C2G38_2038042	A0A397VJD8	A0A397V577	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.771
C2G38_1129330	C2G38_2092795	A0A397VJD8	A0A397UZF7	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	ClpP/crotonase-like domain-containing protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.961
C2G38_1129330	C2G38_2132088	A0A397VJD8	A0A397V351	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.840
C2G38_1129330	C2G38_2133204	A0A397VJD8	A0A397U9P1	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.949
C2G38_1129330	C2G38_2182985	A0A397VJD8	A0A397VCH5	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	Short-chain dehydrogenase/reductase SDR.	0.911
C2G38_1129330	C2G38_2210184	A0A397VJD8	A0A397UNJ8	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	ClpP/crotonase-like domain-containing protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.972
C2G38_1129330	C2G38_2213479	A0A397VJD8	A0A397UC32	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	Putative acyl-CoA dehydrogenase.	0.910
C2G38_1129330	C2G38_2229700	A0A397VJD8	A0A397TY93	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	Thiolase-like protein.	0.929
C2G38_1902024	C2G38_1129330	A0A397U1G4	A0A397VJD8	SCP2 sterol-binding domain-containing protein.	Thiolase, N-terminal domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.929
C2G38_1902024	C2G38_1962755	A0A397U1G4	A0A397VFK1	SCP2 sterol-binding domain-containing protein.	ClpP/crotonase-like domain-containing protein.	0.910
C2G38_1902024	C2G38_2038042	A0A397U1G4	A0A397V577	SCP2 sterol-binding domain-containing protein.	ETF domain-containing protein.	0.605
C2G38_1902024	C2G38_2092795	A0A397U1G4	A0A397UZF7	SCP2 sterol-binding domain-containing protein.	ClpP/crotonase-like domain-containing protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.910
C2G38_1902024	C2G38_2132088	A0A397U1G4	A0A397V351	SCP2 sterol-binding domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.915
C2G38_1902024	C2G38_2133204	A0A397U1G4	A0A397U9P1	SCP2 sterol-binding domain-containing protein.	ETF domain-containing protein.	0.727
C2G38_1902024	C2G38_2182985	A0A397U1G4	A0A397VCH5	SCP2 sterol-binding domain-containing protein.	Short-chain dehydrogenase/reductase SDR.	0.933
C2G38_1902024	C2G38_2210184	A0A397U1G4	A0A397UNJ8	SCP2 sterol-binding domain-containing protein.	ClpP/crotonase-like domain-containing protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.910
C2G38_1902024	C2G38_2213479	A0A397U1G4	A0A397UC32	SCP2 sterol-binding domain-containing protein.	Putative acyl-CoA dehydrogenase.	0.956
C2G38_1902024	C2G38_2229700	A0A397U1G4	A0A397TY93	SCP2 sterol-binding domain-containing protein.	Thiolase-like protein.	0.974