Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_362269Uncharacterized protein. (160 aa)    
Predicted Functional Partners:
C2G38_427441
VHS domain-containing protein.
    
 
 0.917
C2G38_634576
PX domain-containing protein.
    
 0.905
C2G38_2071806
Putative PEP8-vacuolar protein sorting/targeting protein.
    
 
 0.823
C2G38_2210395
t-SNARE.
   
 0.799
C2G38_2041894
Vps5 C terminal like-domain-containing protein.
    
 0.769
C2G38_1971082
Uncharacterized protein.
    
   0.724
C2G38_2171120
Uncharacterized protein.
    
   0.724
C2G38_2112651
Sortilin.
    
 0.683
C2G38_2005644
Sortilin.
    
 0.683
C2G38_2050277
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
  0.680
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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