C2G38_2213651 protein (Gigaspora rosea) - STRING interaction network

Nodes:

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Score

C2G38_2213651

Uncharacterized protein. (915 aa)

Predicted Functional Partners:

C2G38_2148766

0.758

C2G38_380034

0.755

C2G38_2300959

0.755

C2G38_1959773

0.667

C2G38_2263768

0.633

C2G38_2133227

0.630

C2G38_2185710

0.630

C2G38_1963210

0.630

C2G38_2058552

0.630

C2G38_1951175

0.629

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1951175	C2G38_1959773	A0A397W4D5	A0A397VMX1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DRIM domain-containing protein.	0.999
C2G38_1951175	C2G38_1963210	A0A397W4D5	A0A397VHW6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.997
C2G38_1951175	C2G38_2058552	A0A397W4D5	A0A397WAQ8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Fcf1-domain-containing protein.	0.999
C2G38_1951175	C2G38_2133227	A0A397W4D5	A0A397U787	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD40-repeat-containing domain protein.	0.999
C2G38_1951175	C2G38_2185710	A0A397W4D5	A0A397V8N5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
C2G38_1951175	C2G38_2213651	A0A397W4D5	A0A397UDL4	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.629
C2G38_1951175	C2G38_2263768	A0A397W4D5	A0A397VZN9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.996
C2G38_1959773	C2G38_1951175	A0A397VMX1	A0A397W4D5	DRIM domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
C2G38_1959773	C2G38_1963210	A0A397VMX1	A0A397VHW6	DRIM domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.995
C2G38_1959773	C2G38_2058552	A0A397VMX1	A0A397WAQ8	DRIM domain-containing protein.	Fcf1-domain-containing protein.	0.998
C2G38_1959773	C2G38_2133227	A0A397VMX1	A0A397U787	DRIM domain-containing protein.	WD40-repeat-containing domain protein.	0.997
C2G38_1959773	C2G38_2148766	A0A397VMX1	A0A397U871	DRIM domain-containing protein.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.454
C2G38_1959773	C2G38_2185710	A0A397VMX1	A0A397V8N5	DRIM domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.997
C2G38_1959773	C2G38_2213651	A0A397VMX1	A0A397UDL4	DRIM domain-containing protein.	Uncharacterized protein.	0.667
C2G38_1959773	C2G38_2263768	A0A397VMX1	A0A397VZN9	DRIM domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.995
C2G38_1963210	C2G38_1951175	A0A397VHW6	A0A397W4D5	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
C2G38_1963210	C2G38_1959773	A0A397VHW6	A0A397VMX1	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	DRIM domain-containing protein.	0.995
C2G38_1963210	C2G38_2058552	A0A397VHW6	A0A397WAQ8	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	Fcf1-domain-containing protein.	0.994
C2G38_1963210	C2G38_2133227	A0A397VHW6	A0A397U787	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	WD40-repeat-containing domain protein.	0.995
C2G38_1963210	C2G38_2185710	A0A397VHW6	A0A397V8N5	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.994

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Network Stats

number of nodes:

11

number of edges:

51

average node degree:

9.27

avg. local clustering coefficient:

0.952

expected number of edges:

45

PPI enrichment p-value:

0.157

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042128

Nitrate assimilation

2 of 2

2.87

1.01

0.0150

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008942

Nitrite reductase [NAD(P)H] activity

2 of 2

2.87

1.13

0.0089

GO:0015103

Inorganic anion transmembrane transporter activity

2 of 13

2.06

0.81

0.0309

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4791

Mixed, incl. Ferredoxin metabolic process, and Nitrate assimilation

6 of 11

2.61

5.45

2.50e-11

CL:4794

Nitrate assimilation, and NADH-rubredoxin oxidoreductase, C-terminal

5 of 5

2.87

5.16

2.33e-10

CL:2614

3-oxoacyl-[acyl-carrier-protein] synthase activity, and Ketoacyl-synthetase C-terminal extension

2 of 11

2.13

0.79

0.0339

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

aori00910

Nitrogen metabolism

6 of 22

2.31

4.92

5.30e-11

aori01120

Microbial metabolism in diverse environments

5 of 344

1.04

0.79

0.0033

aori01100

Metabolic pathways

7 of 1148

0.66

0.46

0.0092

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009344

Nitrite reductase complex [NAD(P)H]

2 of 2

2.87

1.38

0.0032

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04324

BFD-like [2Fe-2S] binding domain

2 of 3

2.7

1.01

0.0147

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR041854

BFD-like [2Fe-2S]-binding domain superfamily

2 of 3

2.7

0.91

0.0224

IPR041575

NADH-rubredoxin oxidoreductase, C-terminal

2 of 2

2.87

0.91

0.0224

IPR007419

BFD-like [2Fe-2S]-binding domain

2 of 3

2.7

0.91

0.0224

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