Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
C2G38_434762CPSF A subunit region-domain-containing protein. (904 aa)    
Predicted Functional Partners:
C2G38_2231719
PSP domain-containing protein.
   
 0.934
C2G38_251208
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.933
C2G38_2048466
Pre-mRNA splicing factor PRP21 like protein.
   
 0.932
C2G38_2156242
Sec63 Brl domain-containing protein.
   
 
 0.932
C2G38_1976296
PHF5-like protein.
   
 0.931
C2G38_2012660
Uncharacterized protein.
   
 0.929
C2G38_1985976
PRP8 pre-mRNA processing factor 8.
   
 
 0.926
C2G38_2036305
RRM domain-containing protein.
    
 0.919
C2G38_1983445
Matrin-type domain-containing protein.
   
 0.906
C2G38_2151350
Matrin-type domain-containing protein.
    
 0.903
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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