C2G38_2218113 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2218113

Uncharacterized protein. (84 aa)

Predicted Functional Partners:

C2G38_2050534

0.904

C2G38_1960902

0.788

C2G38_2197950

0.771

C2G38_1891060

0.771

C2G38_2078712

0.687

C2G38_1978952

0.678

C2G38_1973988

0.667

C2G38_1968095

0.660

C2G38_2139033

0.655

C2G38_2133082

0.652

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1891060	C2G38_1960902	A0A397W3V9	A0A397VR10	Uncharacterized protein.	Uncharacterized protein.	0.568
C2G38_1891060	C2G38_1973988	A0A397W3V9	A0A397UUV9	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.839
C2G38_1891060	C2G38_2050534	A0A397W3V9	A0A397U464	Uncharacterized protein.	Chromosome segregation 1-like protein.	0.901
C2G38_1891060	C2G38_2078712	A0A397W3V9	A0A397VQ19	Uncharacterized protein.	MIF4G like-domain-containing protein.	0.854
C2G38_1891060	C2G38_2133082	A0A397W3V9	A0A397U9X9	Uncharacterized protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.831
C2G38_1891060	C2G38_2139033	A0A397W3V9	A0A397VQW2	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.968
C2G38_1891060	C2G38_2218113	A0A397W3V9	A0A397UFD2	Uncharacterized protein.	Uncharacterized protein.	0.771
C2G38_1960902	C2G38_1891060	A0A397VR10	A0A397W3V9	Uncharacterized protein.	Uncharacterized protein.	0.568
C2G38_1960902	C2G38_1973988	A0A397VR10	A0A397UUV9	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.551
C2G38_1960902	C2G38_1978952	A0A397VR10	A0A397UL83	Uncharacterized protein.	Cyclin-like protein; Belongs to the cyclin family.	0.525
C2G38_1960902	C2G38_2139033	A0A397VR10	A0A397VQW2	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.671
C2G38_1960902	C2G38_2197950	A0A397VR10	A0A397UT38	Uncharacterized protein.	Armadillo-type protein.	0.568
C2G38_1960902	C2G38_2218113	A0A397VR10	A0A397UFD2	Uncharacterized protein.	Uncharacterized protein.	0.788
C2G38_1968095	C2G38_1973988	A0A397V822	A0A397UUV9	S1 motif domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.730
C2G38_1968095	C2G38_2078712	A0A397V822	A0A397VQ19	S1 motif domain-containing protein.	MIF4G like-domain-containing protein.	0.682
C2G38_1968095	C2G38_2133082	A0A397V822	A0A397U9X9	S1 motif domain-containing protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.753
C2G38_1968095	C2G38_2218113	A0A397V822	A0A397UFD2	S1 motif domain-containing protein.	Uncharacterized protein.	0.660
C2G38_1973988	C2G38_1891060	A0A397UUV9	A0A397W3V9	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.839
C2G38_1973988	C2G38_1960902	A0A397UUV9	A0A397VR10	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.551
C2G38_1973988	C2G38_1968095	A0A397UUV9	A0A397V822	Nuclear cap-binding protein subunit 2.	S1 motif domain-containing protein.	0.730