Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1983540Uncharacterized protein. (343 aa)    
Predicted Functional Partners:
C2G38_1893400
Uncharacterized protein.
    
 0.982
C2G38_2254124
Uncharacterized protein.
    
 0.980
C2G38_2248980
Pre-mRNA-splicing factor SYF1.
   
 0.979
C2G38_2047672
SYF2 splicing factor-domain-containing protein.
    
 0.978
C2G38_2199398
Putative Pre-mRNA splicing protein prp5.
    
 0.978
C2G38_2002399
WD40-repeat-containing domain protein.
    
 0.976
C2G38_68757
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.971
C2G38_2104441
Pre-mRNA splicing factor component-domain-containing protein.
    
 0.967
C2G38_1985976
PRP8 pre-mRNA processing factor 8.
    
 0.966
C2G38_1940179
CWC16 protein.
    
 0.960
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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