C2G38_1983540 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1983540

Uncharacterized protein. (343 aa)

Predicted Functional Partners:

C2G38_68757

0.995

C2G38_2248980

0.993

C2G38_1998107

0.993

C2G38_2228554

0.992

C2G38_2254124

0.992

C2G38_2047672

0.992

C2G38_1985976

0.992

C2G38_2105924

0.992

C2G38_2199398

0.992

C2G38_2019696

0.992

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1983540	C2G38_1985976	A0A397UFI2	A0A397U908	Uncharacterized protein.	PRP8 pre-mRNA processing factor 8.	0.992
C2G38_1983540	C2G38_1998107	A0A397UFI2	A0A397VN42	Uncharacterized protein.	Isy1-like splicing factor.	0.993
C2G38_1983540	C2G38_2019696	A0A397UFI2	A0A397URX8	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.992
C2G38_1983540	C2G38_2047672	A0A397UFI2	A0A397U8C9	Uncharacterized protein.	SYF2 splicing factor-domain-containing protein.	0.992
C2G38_1983540	C2G38_2105924	A0A397UFI2	A0A397UMW5	Uncharacterized protein.	Small nuclear ribonucleo protein polypeptide B.	0.992
C2G38_1983540	C2G38_2199398	A0A397UFI2	A0A397URQ6	Uncharacterized protein.	Putative Pre-mRNA splicing protein prp5.	0.992
C2G38_1983540	C2G38_2228554	A0A397UFI2	A0A397U077	Uncharacterized protein.	Putative membrane-associated protein.	0.992
C2G38_1983540	C2G38_2248980	A0A397UFI2	A0A397UVN0	Uncharacterized protein.	Pre-mRNA-splicing factor SYF1.	0.993
C2G38_1983540	C2G38_2254124	A0A397UFI2	A0A397U3N5	Uncharacterized protein.	Uncharacterized protein.	0.992
C2G38_1983540	C2G38_68757	A0A397UFI2	A0A397UWG2	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.995
C2G38_1985976	C2G38_1983540	A0A397U908	A0A397UFI2	PRP8 pre-mRNA processing factor 8.	Uncharacterized protein.	0.992
C2G38_1985976	C2G38_1998107	A0A397U908	A0A397VN42	PRP8 pre-mRNA processing factor 8.	Isy1-like splicing factor.	0.992
C2G38_1985976	C2G38_2019696	A0A397U908	A0A397URX8	PRP8 pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997
C2G38_1985976	C2G38_2047672	A0A397U908	A0A397U8C9	PRP8 pre-mRNA processing factor 8.	SYF2 splicing factor-domain-containing protein.	0.973
C2G38_1985976	C2G38_2105924	A0A397U908	A0A397UMW5	PRP8 pre-mRNA processing factor 8.	Small nuclear ribonucleo protein polypeptide B.	0.949
C2G38_1985976	C2G38_2199398	A0A397U908	A0A397URQ6	PRP8 pre-mRNA processing factor 8.	Putative Pre-mRNA splicing protein prp5.	0.992
C2G38_1985976	C2G38_2228554	A0A397U908	A0A397U077	PRP8 pre-mRNA processing factor 8.	Putative membrane-associated protein.	0.997
C2G38_1985976	C2G38_2248980	A0A397U908	A0A397UVN0	PRP8 pre-mRNA processing factor 8.	Pre-mRNA-splicing factor SYF1.	0.992
C2G38_1985976	C2G38_2254124	A0A397U908	A0A397U3N5	PRP8 pre-mRNA processing factor 8.	Uncharacterized protein.	0.993
C2G38_1985976	C2G38_68757	A0A397U908	A0A397UWG2	PRP8 pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.997