STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2108728Rhomboid domain-containing protein. (331 aa)    
Predicted Functional Partners:
C2G38_2096123
Putative CDC48-microsomal protein of CDC48/PAS1/SEC18 family of ATPase; Belongs to the AAA ATPase family.
    
 
 0.634
C2G38_1541021
Uncharacterized protein.
    
 
 0.634
C2G38_1540931
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.
    
 
 0.634
C2G38_1948525
PQ loop repeat-domain-containing protein.
    
   0.616
C2G38_1981320
Ctr copper transporter.
    
   0.615
C2G38_2251692
P-loop containing nucleoside triphosphate hydrolase protein.
    
 
 0.594
C2G38_1972253
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.
    
 
 0.594
C2G38_2019993
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
   0.557
C2G38_2012836
Uncharacterized protein.
    
   0.532
C2G38_2025407
ATPase_AAA_core domain-containing protein.
    
 
 0.505
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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