C2G38_2252078 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2252078

Uncharacterized protein. (252 aa)

Predicted Functional Partners:

C2G38_2126072

0.969

TIF6

0.954

C2G38_1998594

0.923

C2G38_2131605

0.896

C2G38_2002247

0.892

C2G38_2079577

0.871

C2G38_2133472

0.863

C2G38_1996931

0.846

C2G38_2002553

0.838

C2G38_2000617

0.810

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1996931	C2G38_1998594	A0A397VXQ0	A0A397VRZ9	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	C2H2 type zinc-finger-domain-containing protein.	0.752
C2G38_1996931	C2G38_2000617	A0A397VXQ0	A0A397VGW8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.998
C2G38_1996931	C2G38_2002247	A0A397VXQ0	A0A397UZE8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	RL10P_insert domain-containing protein.	0.673
C2G38_1996931	C2G38_2079577	A0A397VXQ0	A0A397VGG4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Translation protein SH3-like domain-containing protein.	0.953
C2G38_1996931	C2G38_2126072	A0A397VXQ0	A0A397TYR5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	P-loop containing nucleoside triphosphate hydrolase protein.	0.843
C2G38_1996931	C2G38_2131605	A0A397VXQ0	A0A397VFJ0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Putative RPL43B-60S large subunit ribosomal protein.	0.994
C2G38_1996931	C2G38_2133472	A0A397VXQ0	A0A397U863	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal protein L5 domain-containing protein; Belongs to the universal ribosomal protein uL5 family.	0.998
C2G38_1996931	C2G38_2252078	A0A397VXQ0	A0A397UGK6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.846
C2G38_1996931	TIF6	A0A397VXQ0	A0A397U3J5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.968
C2G38_1998594	C2G38_1996931	A0A397VRZ9	A0A397VXQ0	C2H2 type zinc-finger-domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.752
C2G38_1998594	C2G38_2000617	A0A397VRZ9	A0A397VGW8	C2H2 type zinc-finger-domain-containing protein.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.861
C2G38_1998594	C2G38_2002247	A0A397VRZ9	A0A397UZE8	C2H2 type zinc-finger-domain-containing protein.	RL10P_insert domain-containing protein.	0.958
C2G38_1998594	C2G38_2002553	A0A397VRZ9	A0A397V060	C2H2 type zinc-finger-domain-containing protein.	Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family.	0.775
C2G38_1998594	C2G38_2079577	A0A397VRZ9	A0A397VGG4	C2H2 type zinc-finger-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.528
C2G38_1998594	C2G38_2126072	A0A397VRZ9	A0A397TYR5	C2H2 type zinc-finger-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.623
C2G38_1998594	C2G38_2131605	A0A397VRZ9	A0A397VFJ0	C2H2 type zinc-finger-domain-containing protein.	Putative RPL43B-60S large subunit ribosomal protein.	0.820
C2G38_1998594	C2G38_2133472	A0A397VRZ9	A0A397U863	C2H2 type zinc-finger-domain-containing protein.	Ribosomal protein L5 domain-containing protein; Belongs to the universal ribosomal protein uL5 family.	0.845
C2G38_1998594	C2G38_2252078	A0A397VRZ9	A0A397UGK6	C2H2 type zinc-finger-domain-containing protein.	Uncharacterized protein.	0.923
C2G38_1998594	TIF6	A0A397VRZ9	A0A397U3J5	C2H2 type zinc-finger-domain-containing protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.961
C2G38_2000617	C2G38_1996931	A0A397VGW8	A0A397VXQ0	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.998