Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2212588Archaeal ATPase-domain-containing protein. (425 aa)    
Predicted Functional Partners:
C2G38_1954991
WD40 repeat-like protein.
    
 0.930
C2G38_2135724
Pre-mRNA processing factor 3-domain-containing protein.
    
 0.904
C2G38_2221509
Uncharacterized protein.
    
 0.904
C2G38_2049696
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.903
C2G38_2068073
Nop domain-containing protein.
    
 0.893
C2G38_2228554
Putative membrane-associated protein.
   
 0.878
C2G38_1952439
Small nuclear ribonucleoprotein Sm D3.
   
 0.814
C2G38_2019696
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.810
C2G38_1971504
Sm domain-containing protein.
   
 0.802
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.786
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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