C2G38_2108084 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2108084

Indoleamine 2,3-dioxygenase. (422 aa)

Predicted Functional Partners:

BNA5

0.917

C2G38_1970242

0.838

C2G38_2040047

0.820

C2G38_575353

0.802

C2G38_2217484

0.802

C2G38_2251682

0.802

C2G38_2240561

0.802

C2G38_2244668

0.786

C2G38_2082065

0.786

C2G38_2014733

0.786

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNA5	C2G38_1970242	A0A397UCK7	A0A397V4C0	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	0.575
BNA5	C2G38_2014733	A0A397UCK7	A0A397VGK6	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Uncharacterized protein.	0.823
BNA5	C2G38_2040047	A0A397UCK7	A0A397UXY9	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Tyrosine decarboxylase 1-like protein.	0.470
BNA5	C2G38_2108084	A0A397UCK7	A0A397UH59	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Indoleamine 2,3-dioxygenase.	0.917
BNA5	C2G38_2217484	A0A397UCK7	A0A397U7T6	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Tryptophan synthase.	0.800
C2G38_1970242	BNA5	A0A397V4C0	A0A397UCK7	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	0.575
C2G38_1970242	C2G38_2040047	A0A397V4C0	A0A397UXY9	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	Tyrosine decarboxylase 1-like protein.	0.936
C2G38_1970242	C2G38_2082065	A0A397V4C0	A0A397VF01	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	Flavin-containing amine oxidoreductase-domain containing protein.	0.800
C2G38_1970242	C2G38_2108084	A0A397V4C0	A0A397UH59	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	Indoleamine 2,3-dioxygenase.	0.838
C2G38_1970242	C2G38_2217484	A0A397V4C0	A0A397U7T6	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	Tryptophan synthase.	0.929
C2G38_1970242	C2G38_2244668	A0A397V4C0	A0A397VCW5	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	O-methyltransferase-domain-containing protein.	0.572
C2G38_2014733	BNA5	A0A397VGK6	A0A397UCK7	Uncharacterized protein.	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	0.823
C2G38_2014733	C2G38_2040047	A0A397VGK6	A0A397UXY9	Uncharacterized protein.	Tyrosine decarboxylase 1-like protein.	0.815
C2G38_2014733	C2G38_2108084	A0A397VGK6	A0A397UH59	Uncharacterized protein.	Indoleamine 2,3-dioxygenase.	0.786
C2G38_2014733	C2G38_2217484	A0A397VGK6	A0A397U7T6	Uncharacterized protein.	Tryptophan synthase.	0.802
C2G38_2040047	BNA5	A0A397UXY9	A0A397UCK7	Tyrosine decarboxylase 1-like protein.	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	0.470
C2G38_2040047	C2G38_1970242	A0A397UXY9	A0A397V4C0	Tyrosine decarboxylase 1-like protein.	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein.	0.936
C2G38_2040047	C2G38_2014733	A0A397UXY9	A0A397VGK6	Tyrosine decarboxylase 1-like protein.	Uncharacterized protein.	0.815
C2G38_2040047	C2G38_2082065	A0A397UXY9	A0A397VF01	Tyrosine decarboxylase 1-like protein.	Flavin-containing amine oxidoreductase-domain containing protein.	0.800
C2G38_2040047	C2G38_2108084	A0A397UXY9	A0A397UH59	Tyrosine decarboxylase 1-like protein.	Indoleamine 2,3-dioxygenase.	0.820