Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C2G38_2252079RBR-type E3 ubiquitin transferase. (336 aa)    
Predicted Functional Partners:
C2G38_2133472
Ribosomal protein L5 domain-containing protein; Belongs to the universal ribosomal protein uL5 family.
   
 0.955
C2G38_1982663
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.954
C2G38_1700369
Ribosomal protein L24e.
   
 0.954
C2G38_1965228
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.953
C2G38_1975319
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.952
C2G38_1963177
40S ribosomal protein S1.
   
 0.952
C2G38_1977220
Eukaryotic ribosomal protein L18.
  
 0.951
C2G38_2132063
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.951
C2G38_2131701
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
  
 0.951
C2G38_1978818
Cytosolic 60S large ribosomal protein L39.
   
 0.950
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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