STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2252079RBR-type E3 ubiquitin transferase. (336 aa)    
Predicted Functional Partners:
C2G38_1960902
Uncharacterized protein.
   
  0.987
C2G38_1969097
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.961
C2G38_1972121
40S ribosomal protein S19-A.
   
 0.960
C2G38_2094776
40S ribosomal protein S17-A.
   
 0.959
C2G38_2263768
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.958
C2G38_394958
Ribosomal protein S17-domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 0.956
C2G38_1963177
40S ribosomal protein S1.
   
 0.956
C2G38_1982663
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.955
C2G38_2034522
Putative 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.955
C2G38_2131701
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
  
 0.955
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.