STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2216129Fip1 domain-containing protein. (123 aa)    
Predicted Functional Partners:
C2G38_1969518
WD40-repeat-containing domain protein.
   
 0.942
C2G38_2021196
TPR_REGION domain-containing protein.
   
 0.921
C2G38_2037154
Uncharacterized protein.
    
 0.921
C2G38_2128194
Symplekin tight junction protein C terminal-domain-containing protein.
    
 0.917
C2G38_433968
Ssu72-like protein.
    
 0.913
C2G38_669675
DWNN domain-containing protein.
    
 0.912
C2G38_2127177
CPSF A subunit region-domain-containing protein.
   
 0.909
C2G38_1985499
Beta-lactamase-like protein.
    
 0.906
C2G38_1201310
RRM domain-containing protein.
    
 0.897
C2G38_2226232
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
   
 0.883
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.