STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2110749WD40 repeat-like protein; Belongs to the WD repeat SEC13 family. (310 aa)    
Predicted Functional Partners:
C2G38_600507
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
C2G38_49446
TPR_REGION domain-containing protein.
    
 0.999
C2G38_2003608
WD_REPEATS_REGION domain-containing protein.
    
 0.999
C2G38_2176027
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.999
C2G38_2221055
WD_REPEATS_REGION domain-containing protein.
    
 0.998
C2G38_573612
Zinc_ribbon_16 domain-containing protein.
    
 0.998
C2G38_2187067
Uncharacterized protein.
    
 0.998
C2G38_1026810
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
 0.997
C2G38_2199878
WD40-repeat-containing domain protein.
   
 0.997
C2G38_2100481
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.995
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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