Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C2G38_1980205AAA-domain-containing protein; Belongs to the AAA ATPase family. (617 aa)    
Predicted Functional Partners:
C2G38_578211
WD40-repeat-containing domain protein.
   
 
 0.971
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.963
C2G38_2219102
Ribosome production factor 2.
   
 
 0.961
C2G38_2243833
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.952
C2G38_2069401
Uncharacterized protein.
   
  
 0.943
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.940
C2G38_2131997
Superkiller viralicidic activity 2-like 2-like protein.
   
 
 0.937
C2G38_1997580
Putative ATP-dependent RNA helicase.
   
 
 0.937
C2G38_1289857
RRM domain-containing protein.
   
 
 0.934
C2G38_2324382
Protein MAK16; Belongs to the MAK16 family.
   
 
 0.929
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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