C2G38_2206561 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2206561

NUC153 domain-containing protein. (609 aa)

Predicted Functional Partners:

C2G38_2253619

0.995

C2G38_1965240

0.995

C2G38_1951175

0.990

C2G38_1948129

0.990

C2G38_2211794

0.989

C2G38_2222685

0.986

C2G38_2017649

0.986

C2G38_567202

0.985

NAT10

0.985

C2G38_2110899

0.984

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1948129	C2G38_1951175	A0A397W801	A0A397W4D5	Apoptosis antagonizing transcription factor-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.969
C2G38_1948129	C2G38_1965240	A0A397W801	A0A397VBP7	Apoptosis antagonizing transcription factor-domain-containing protein.	WD40-repeat-containing domain protein.	0.992
C2G38_1948129	C2G38_2017649	A0A397W801	A0A397V1B0	Apoptosis antagonizing transcription factor-domain-containing protein.	Utp21 specific WD40 associated putative domain-containing protein.	0.971
C2G38_1948129	C2G38_2110899	A0A397W801	A0A397UEC6	Apoptosis antagonizing transcription factor-domain-containing protein.	Bystin.	0.986
C2G38_1948129	C2G38_2206561	A0A397W801	A0A397UJ72	Apoptosis antagonizing transcription factor-domain-containing protein.	NUC153 domain-containing protein.	0.990
C2G38_1948129	C2G38_2211794	A0A397W801	A0A397UE15	Apoptosis antagonizing transcription factor-domain-containing protein.	Sas10 C-terminal domain-containing protein.	0.985
C2G38_1948129	C2G38_2222685	A0A397W801	A0A397U274	Apoptosis antagonizing transcription factor-domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.975
C2G38_1948129	C2G38_2253619	A0A397W801	A0A397U6E4	Apoptosis antagonizing transcription factor-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.993
C2G38_1948129	C2G38_567202	A0A397W801	A0A397UF69	Apoptosis antagonizing transcription factor-domain-containing protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.987
C2G38_1948129	NAT10	A0A397W801	A0A397UPL8	Apoptosis antagonizing transcription factor-domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.992
C2G38_1951175	C2G38_1948129	A0A397W4D5	A0A397W801	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Apoptosis antagonizing transcription factor-domain-containing protein.	0.969
C2G38_1951175	C2G38_1965240	A0A397W4D5	A0A397VBP7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD40-repeat-containing domain protein.	0.993
C2G38_1951175	C2G38_2017649	A0A397W4D5	A0A397V1B0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Utp21 specific WD40 associated putative domain-containing protein.	0.995
C2G38_1951175	C2G38_2110899	A0A397W4D5	A0A397UEC6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Bystin.	0.995
C2G38_1951175	C2G38_2206561	A0A397W4D5	A0A397UJ72	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	NUC153 domain-containing protein.	0.990
C2G38_1951175	C2G38_2211794	A0A397W4D5	A0A397UE15	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 C-terminal domain-containing protein.	0.998
C2G38_1951175	C2G38_2222685	A0A397W4D5	A0A397U274	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 22.	0.987
C2G38_1951175	C2G38_2253619	A0A397W4D5	A0A397U6E4	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.980
C2G38_1951175	C2G38_567202	A0A397W4D5	A0A397UF69	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10/Utp3/C1D family-domain-containing protein.	0.997
C2G38_1951175	NAT10	A0A397W4D5	A0A397UPL8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.978