C2G38_2045946 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2045946

Uncharacterized protein. (315 aa)

Predicted Functional Partners:

C2G38_2036805

0.963

C2G38_2132241

0.891

C2G38_1046816

0.826

C2G38_1988266

0.810

C2G38_1887847

0.798

C2G38_1993792

0.790

C2G38_155365

0.779

C2G38_2249624

0.779

C2G38_2005704

0.751

C2G38_2033674

0.740

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1046816	C2G38_155365	A0A397U138	A0A397UKR8	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.682
C2G38_1046816	C2G38_1887847	A0A397U138	A0A397UP35	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme/RWD-like protein.	0.443
C2G38_1046816	C2G38_1988266	A0A397U138	A0A397U4I9	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin and ribosomal protein S27a-like protein.	0.816
C2G38_1046816	C2G38_1993792	A0A397U138	A0A397TRM9	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	HECT domain-containing protein.	0.728
C2G38_1046816	C2G38_2045946	A0A397U138	A0A397UK29	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.826
C2G38_1046816	C2G38_2249624	A0A397U138	A0A397USB5	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.682
C2G38_155365	C2G38_1046816	A0A397UKR8	A0A397U138	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	0.682
C2G38_155365	C2G38_1887847	A0A397UKR8	A0A397UP35	Uncharacterized protein.	Ubiquitin-conjugating enzyme/RWD-like protein.	0.569
C2G38_155365	C2G38_1988266	A0A397UKR8	A0A397U4I9	Uncharacterized protein.	Ubiquitin and ribosomal protein S27a-like protein.	0.812
C2G38_155365	C2G38_1993792	A0A397UKR8	A0A397TRM9	Uncharacterized protein.	HECT domain-containing protein.	0.727
C2G38_155365	C2G38_2045946	A0A397UKR8	A0A397UK29	Uncharacterized protein.	Uncharacterized protein.	0.779
C2G38_1887847	C2G38_1046816	A0A397UP35	A0A397U138	Ubiquitin-conjugating enzyme/RWD-like protein.	Ubiquitin-conjugating enzyme E2 E1-like protein; Belongs to the ubiquitin-conjugating enzyme family.	0.443
C2G38_1887847	C2G38_155365	A0A397UP35	A0A397UKR8	Ubiquitin-conjugating enzyme/RWD-like protein.	Uncharacterized protein.	0.569
C2G38_1887847	C2G38_1988266	A0A397UP35	A0A397U4I9	Ubiquitin-conjugating enzyme/RWD-like protein.	Ubiquitin and ribosomal protein S27a-like protein.	0.757
C2G38_1887847	C2G38_1993792	A0A397UP35	A0A397TRM9	Ubiquitin-conjugating enzyme/RWD-like protein.	HECT domain-containing protein.	0.609
C2G38_1887847	C2G38_2033674	A0A397UP35	A0A397VIN3	Ubiquitin-conjugating enzyme/RWD-like protein.	Uncharacterized protein.	0.911
C2G38_1887847	C2G38_2036805	A0A397UP35	A0A397VC82	Ubiquitin-conjugating enzyme/RWD-like protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.740
C2G38_1887847	C2G38_2045946	A0A397UP35	A0A397UK29	Ubiquitin-conjugating enzyme/RWD-like protein.	Uncharacterized protein.	0.798
C2G38_1887847	C2G38_2132241	A0A397UP35	A0A397UWA1	Ubiquitin-conjugating enzyme/RWD-like protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.712
C2G38_1887847	C2G38_2249624	A0A397UP35	A0A397USB5	Ubiquitin-conjugating enzyme/RWD-like protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.569