C2G38_2004913 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2004913

DIOX_N domain-containing protein. (207 aa)

Predicted Functional Partners:

C2G38_2199556

0.885

C2G38_2120978

0.881

C2G38_2130984

0.766

C2G38_1993755

0.764

C2G38_1975820

0.738

C2G38_1630992

0.696

C2G38_1979875

0.656

C2G38_2216096

0.642

C2G38_2065670

0.641

C2G38_2192922

0.633

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1630992	C2G38_2004913	A0A397W976	A0A397UKX2	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	DIOX_N domain-containing protein.	0.696
C2G38_1630992	C2G38_2120978	A0A397W976	A0A397U251	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Autophagy-related protein 17.	0.996
C2G38_1630992	C2G38_2199556	A0A397W976	A0A397V0J1	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.992
C2G38_1975820	C2G38_2004913	A0A397UUW1	A0A397UKX2	Integral membrane protein S linking to the trans Golgi network-domain-containing protein.	DIOX_N domain-containing protein.	0.738
C2G38_1979875	C2G38_1993755	A0A397UJA4	A0A397U0D7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	0.647
C2G38_1979875	C2G38_2004913	A0A397UJA4	A0A397UKX2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	DIOX_N domain-containing protein.	0.656
C2G38_1979875	C2G38_2065670	A0A397UJA4	A0A397W1J4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.992
C2G38_1993755	C2G38_1979875	A0A397U0D7	A0A397UJA4	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.647
C2G38_1993755	C2G38_2004913	A0A397U0D7	A0A397UKX2	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	DIOX_N domain-containing protein.	0.764
C2G38_1993755	C2G38_2065670	A0A397U0D7	A0A397W1J4	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	TPR_REGION domain-containing protein.	0.669
C2G38_1993755	C2G38_2130984	A0A397U0D7	A0A397W948	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.525
C2G38_2004913	C2G38_1630992	A0A397UKX2	A0A397W976	DIOX_N domain-containing protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.696
C2G38_2004913	C2G38_1975820	A0A397UKX2	A0A397UUW1	DIOX_N domain-containing protein.	Integral membrane protein S linking to the trans Golgi network-domain-containing protein.	0.738
C2G38_2004913	C2G38_1979875	A0A397UKX2	A0A397UJA4	DIOX_N domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.656
C2G38_2004913	C2G38_1993755	A0A397UKX2	A0A397U0D7	DIOX_N domain-containing protein.	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	0.764
C2G38_2004913	C2G38_2065670	A0A397UKX2	A0A397W1J4	DIOX_N domain-containing protein.	TPR_REGION domain-containing protein.	0.641
C2G38_2004913	C2G38_2120978	A0A397UKX2	A0A397U251	DIOX_N domain-containing protein.	Autophagy-related protein 17.	0.881
C2G38_2004913	C2G38_2130984	A0A397UKX2	A0A397W948	DIOX_N domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.766
C2G38_2004913	C2G38_2192922	A0A397UKX2	A0A397V2K2	DIOX_N domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.633
C2G38_2004913	C2G38_2199556	A0A397UKX2	A0A397V0J1	DIOX_N domain-containing protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.885