Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1978927FRG1-like family-domain-containing protein. (226 aa)    
Predicted Functional Partners:
C2G38_1997931
Armadillo-type protein.
   
   0.896
C2G38_2002399
WD40-repeat-containing domain protein.
    
   0.834
C2G38_2202603
WD40-repeat-containing domain protein.
    
   0.821
C2G38_1985976
PRP8 pre-mRNA processing factor 8.
    
   0.816
C2G38_2019696
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.753
C2G38_1952439
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.751
C2G38_2250200
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.746
C2G38_2199398
Putative Pre-mRNA splicing protein prp5.
    
   0.746
C2G38_2104441
Pre-mRNA splicing factor component-domain-containing protein.
    
   0.743
C2G38_1988889
Small nuclear ribonucleoprotein Sm D2.
    
   0.742
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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