Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_211144RING-CH-type domain-containing protein. (324 aa)    
Predicted Functional Partners:
C2G38_1973269
Ubiquitin-conjugating enzyme/RWD-like protein.
    
 
 0.859
C2G38_2131020
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.847
C2G38_2124350
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.815
C2G38_2107100
Thioredoxin-like protein.
    
 
 0.794
C2G38_126766
FK506-binding protein.
    
 
 0.762
C2G38_2008629
RING-type domain-containing protein.
    
 
 0.685
C2G38_1997897
RING-type domain-containing protein.
    
 
 0.685
C2G38_2050738
NPL4 family-domain-containing protein.
    
 
 0.678
C2G38_155365
Uncharacterized protein.
    
 0.622
C2G38_2249624
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.622
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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