STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2040658Pseudouridine synthase. (335 aa)    
Predicted Functional Partners:
C2G38_1986811
Pseudouridine synthase.
    
 
 0.903
C2G38_258436
Uncharacterized protein.
  
 
 0.897
C2G38_2247131
tRNA modification GTPase GTPBP3, mitochondrial-like protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.892
C2G38_135268
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.864
C2G38_2228645
Uncharacterized protein.
   
 
 0.862
C2G38_2046348
Mitochondrial 39-S ribosomal protein L47 (MRP-L47)-domain-containing protein.
    
 
 0.858
C2G38_2214239
Ribosomal protein L13-domain-containing protein.
  
   0.850
C2G38_2134278
Translation protein; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.850
C2G38_2204396
Ribosomal protein L18e/L15P.
   
   0.842
C2G38_2187569
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.841
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.