STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2199494P-loop containing nucleoside triphosphate hydrolase protein. (978 aa)    
Predicted Functional Partners:
C2G38_1985976
PRP8 pre-mRNA processing factor 8.
   
 0.958
C2G38_2156242
Sec63 Brl domain-containing protein.
   
 0.956
C2G38_2019696
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.948
C2G38_1987308
PRP1 splicing factor, N-terminal-domain-containing protein.
   
 0.947
C2G38_2203389
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 0.945
C2G38_2228554
Putative membrane-associated protein.
   
 0.943
C2G38_2049906
WD40 repeat-like protein.
   
 0.943
C2G38_68757
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.943
C2G38_1988889
Small nuclear ribonucleoprotein Sm D2.
   
 0.941
C2G38_1952439
Small nuclear ribonucleoprotein Sm D3.
   
 0.937
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.