STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2190004C2H2-type domain-containing protein. (458 aa)    
Predicted Functional Partners:
C2G38_1991036
RNA polymerase I.
    
 0.817
C2G38_2125139
DNA directed RNA polymerase.
    
 0.817
C2G38_620615
Uncharacterized protein.
    
 0.817
C2G38_1984256
8 kDa subunit-domain-containing protein.
    
 0.817
C2G38_2251141
DNA-directed RNA polymerase.
    
 0.817
C2G38_1972823
DNA-directed RNA polymerase, subunit RPB6.
    
 0.817
C2G38_1948619
TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.817
C2G38_1987303
Transcription initiation factor IIF, beta subunit-domain-containing protein.
    
 0.812
C2G38_2030141
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.810
C2G38_2147543
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.804
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.