STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2143303Mysoin-binding motif of peroxisomes-domain-containing protein. (588 aa)    
Predicted Functional Partners:
C2G38_2172896
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.980
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.974
C2G38_2166344
DNA ligase.
   
 0.962
C2G38_2176948
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.961
C2G38_2123687
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.960
C2G38_1973994
DNA polymerase alpha/epsilon subunit B-domain-containing protein.
   
 0.946
C2G38_1967981
Replication factor RFC1 C terminal domain-containing protein.
   
 0.946
C2G38_2057689
Ubiquitin-like protein pmt3/smt3.
   
 0.942
C2G38_2075897
WD40-repeat-containing domain protein.
   
  0.941
C2G38_2128604
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.928
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.